Surfaces affect ion pairing

被引:54
作者
Chorny, I [1 ]
Dill, KA [1 ]
Jacobson, MP [1 ]
机构
[1] Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94143 USA
关键词
D O I
10.1021/jp055043m
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In water, positive ions attract negative ions. That attraction can be modulated if a hydrophobic surface is present near the two ions in water. Using computer simulations with explicit and implicit water, we study how an ion embedded on a hydrophobic surface interacts with another nearby ion in water. Using hydrophobic surfaces with different curvatures, we find that the contact interaction between a positive and negative ion is strongly affected by the curvature of an adjacent surface, either stabilizing or destabilizing the ion pair. We also find that the solvent-separated ion pair (SSIP) can be made more stable than the contacting ion pair by the presence of a surface. This may account for why bridging waters are often found in protein crystal structures. We also note that implicit solvent models do not account for SSIPs. Finally, we find that there are charge asymmetries: an embedded positive charge attracting a negative ion is different than an embedded negative charge attracting a positive ion. Such asymmetries are also not predicted by implicit solvent models. These results may be useful for improving computational models of solvation in biology and chemistry.
引用
收藏
页码:24056 / 24060
页数:5
相关论文
共 34 条
[1]  
Berendsen H. J. C., 1981, Interaction models for water in relation to protein hydration
[2]   GROMACS - A MESSAGE-PASSING PARALLEL MOLECULAR-DYNAMICS IMPLEMENTATION [J].
BERENDSEN, HJC ;
VANDERSPOEL, D ;
VANDRUNEN, R .
COMPUTER PHYSICS COMMUNICATIONS, 1995, 91 (1-3) :43-56
[3]   MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH [J].
BERENDSEN, HJC ;
POSTMA, JPM ;
VANGUNSTEREN, WF ;
DINOLA, A ;
HAAK, JR .
JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) :3684-3690
[4]   Hydration structure of the α-chymotrypsin substrate binding pocket:: the impact of constrained geometry [J].
Carey, C ;
Cheng, YK ;
Rossky, PJ .
CHEMICAL PHYSICS, 2000, 258 (2-3) :415-425
[5]   Surface topography dependence of biomolecular hydrophobic hydration [J].
Cheng, YK ;
Rossky, PJ .
NATURE, 1998, 392 (6677) :696-699
[6]   On the mechanism of hydrophobic association of nanoscopic solutes [J].
Choudhury, N ;
Pettitt, BM .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (10) :3556-3567
[7]   THE EFFECT OF WATER MODELS ON THE INTERACTION OF THE SODIUM-CHLORIDE ION-PAIR IN WATER - MOLECULAR-DYNAMICS SIMULATIONS [J].
DANG, LX ;
RICE, JE ;
KOLLMAN, PA .
JOURNAL OF CHEMICAL PHYSICS, 1990, 93 (10) :7528-7529
[8]   PARTICLE MESH EWALD - AN N.LOG(N) METHOD FOR EWALD SUMS IN LARGE SYSTEMS [J].
DARDEN, T ;
YORK, D ;
PEDERSEN, L .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (12) :10089-10092
[9]   A SMOOTH PARTICLE MESH EWALD METHOD [J].
ESSMANN, U ;
PERERA, L ;
BERKOWITZ, ML ;
DARDEN, T ;
LEE, H ;
PEDERSEN, LG .
JOURNAL OF CHEMICAL PHYSICS, 1995, 103 (19) :8577-8593
[10]  
GILSON MK, 1987, BIOPHYS J, V51, pA234