Reconciling the many faces of lateral gene transfer

被引：156

作者：

Lawrence, JG ^{[1
]}

Ochman, H

机构：

[1] Univ Pittsburgh, Pittsburgh Bacteriophage Inst, Pittsburgh, PA 15260 USA

[2] Univ Pittsburgh, Dept Biol Sci, Pittsburgh, PA 15260 USA

[3] Univ Arizona, Dept Ecol & Evolut, Tucson, AZ 85721 USA

来源：

TRENDS IN MICROBIOLOGY | 2002年 / 10卷 / 01期

关键词：

D O I：

10.1016/S0966-842X(01)02282-X

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The various methods for detecting potential lateral gene transfer events typically uncover different sets of genes. Because the procedures used to recognize transferred genes ask different types of questions, the sets of genes identified by each procedure must be interpreted in the appropriate context. The integration of biological information, along with these analytical procedures, makes it possible to assess the total impact of lateral gene transfer on microbial genomes.

引用

页码：1 / 4

页数：4

共 21 条

[1] Intragenomic base content variation is a potential source of biases when searching for horizontally transferred genes [J].

Guindon, S ;

Perrière, G .

MOLECULAR BIOLOGY AND EVOLUTION, 2001, 18 (09) :1838-1840

[2] How to interpret an anonymous bacterial genome: Machine learning approach to gene identification [J].

Hayes, WS ;

Borodovsky, M .

GENOME RESEARCH, 1998, 8 (11) :1154-1171

[3] Global dinucleotide signatures and analysis of genomic heterogeneity [J].

Karlin, S .

CURRENT OPINION IN MICROBIOLOGY, 1998, 1 (05) :598-610

[4] Codon bias and base composition are poor indicators of horizontally transferred genes [J].

Koski, LB ;

Morton, RA ;

Golding, GB .

MOLECULAR BIOLOGY AND EVOLUTION, 2001, 18 (03) :404-412

[5] Initial sequencing and analysis of the human genome [J].

Lander, ES ;

Int Human Genome Sequencing Consortium ;

Linton, LM ;

Birren, B ;

Nusbaum, C ;

Zody, MC ;

Baldwin, J ;

Devon, K ;

Dewar, K ;

Doyle, M ;

FitzHugh, W ;

Funke, R ;

Gage, D ;

Harris, K ;

Heaford, A ;

Howland, J ;

Kann, L ;

Lehoczky, J ;

LeVine, R ;

McEwan, P ;

McKernan, K ;

Meldrim, J ;

Mesirov, JP ;

Miranda, C ;

Morris, W ;

Naylor, J ;

Raymond, C ;

Rosetti, M ;

Santos, R ;

Sheridan, A ;

Sougnez, C ;

Stange-Thomann, N ;

Stojanovic, N ;

Subramanian, A ;

Wyman, D ;

Rogers, J ;

Sulston, J ;

Ainscough, R ;

Beck, S ;

Bentley, D ;

Burton, J ;

Clee, C ;

Carter, N ;

Coulson, A ;

Deadman, R ;

Deloukas, P ;

Dunham, A ;

Dunham, I ;

Durbin, R ;

French, L .

NATURE, 2001, 409 (6822) :860-921

[6]

LAWRENCE JG, 1992, GENETICS, V131, P753

[7] Amelioration of bacterial genomes: Rates of change and exchange [J].

Lawrence, JG ;

Ochman, H .

JOURNAL OF MOLECULAR EVOLUTION, 1997, 44 (04) :383-397

[8] Molecular archaeology of the Escherichia coli genome [J].

Lawrence, JG ;

Ochman, H .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (16) :9413-9417

[9] EVIDENCE FOR HORIZONTAL GENE-TRANSFER IN ESCHERICHIA-COLI SPECIATION [J].

MEDIGUE, C ;

ROUXEL, T ;

VIGIER, P ;

HENAUT, A ;

DANCHIN, A .

JOURNAL OF MOLECULAR BIOLOGY, 1991, 222 (04) :851-856

[10] Codon usage and lateral gene transfer in Bacillus subtilis [J].

Moszer, I ;

Rocha, EPC ;

Danchin, A .

CURRENT OPINION IN MICROBIOLOGY, 1999, 2 (05) :524-528

← 1 2 3 →