GLYDE - an expressive XML standard for the representation of glycan structure

被引：36

作者：

Sahoo, SS

Thomas, C

Sheth, A

Henson, C

York, WS

机构：

[1] Univ Georgia, Complex Carbohydrate Res Ctr, Athens, GA 30602 USA

[2] Univ Georgia, Dept Comp Sci, LSDIS Lab, Athens, GA 30602 USA

来源：

CARBOHYDRATE RESEARCH | 2005年 / 340卷 / 18期

关键词：

GLYcan data exchange (GLYDE); glycoinformatics; XML-based glycan representation; glycan data interoperability;

D O I：

10.1016/j.carres.2005.09.019

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The amount of glycomics data being generated is rapidly increasing as a result of improvements in analytical and computational methods. Correlation and analysis of this large, distributed data set requires an extensible and flexible representational standard that is also 'understood by a wide range of software applications. An XML-based data representation standard that faithfully captures essential structural details of a glycan moiety along with additional information (such as data provenance) to aid the interpretation and usage of glycan data, will facilitate the exchange of glycomics data across the scientific community. To meet this need, we introduce GLY can Data Exchange (GLYDE) standard as an XML-based representation format to enable interoperability and exchange of glycomics data. An online tool (http://128.192.9.86/stargate/formatlndex.jsp) for the conversion of other representations to GLYDE format has been developed. (c) 2005 Elsevier Ltd. All rights reserved.

引用

页码：2802 / 2807

页数：6

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