Ordered differential display: A simple method for systematic comparison of gene expression profiles

被引:64
作者
Matz, M [1 ]
Usman, N [1 ]
Shagin, D [1 ]
Bogdanova, E [1 ]
Lukyanov, S [1 ]
机构
[1] RUSSIAN ACAD SCI,SHEMYAKIN & OVCHINNIKOV INST BIOORGAN CHEM,MOSCOW 117871,RUSSIA
关键词
D O I
10.1093/nar/25.12.2541
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A method for display of 3'-end restriction fragments of cDNAs is proposed, extending the idea reported recently. First, representative pools of such fragments are selectively amplified using PCR suppression effect. Then, simplified subsets of these fragments suitable for comparison by PAGE are amplified by adapter-specific primers extended by two randomly picked bases at their 3' ends. By testing all possible combinations of extended primers the whole mRNA pool may be systematically investigated. The method was applied to search for molecular regional markers of freshwater planarian Dugesia tigrina.
引用
收藏
页码:2541 / 2542
页数:2
相关论文
共 11 条
[1]   Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: Analysis of gene expression during potato tuber development [J].
Bachem, CWB ;
vanderHoeven, RS ;
deBruijn, SM ;
Vreugdenhil, D ;
Zabeau, M ;
Visser, RGF .
PLANT JOURNAL, 1996, 9 (05) :745-753
[2]  
GARCIAFERNANDEZ J, 1993, DEVELOPMENT, V118, P241
[3]   GENERATION OF SINGLE-STRANDED-DNA BY THE POLYMERASE CHAIN-REACTION AND ITS APPLICATION TO DIRECT SEQUENCING OF THE HLA-DQA LOCUS [J].
GYLLENSTEN, UB ;
ERLICH, HA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (20) :7652-7656
[4]   IDENTIFICATION OF DIFFERENTIALLY EXPRESSED GENES BY RESTRICTION ENDONUCLEASE-BASED GENE-EXPRESSION FINGERPRINTING [J].
IVANOVA, NB ;
BELYAVSKY, AV .
NUCLEIC ACIDS RESEARCH, 1995, 23 (15) :2954-2958
[5]   RNA fingerprinting by molecular indexing [J].
Kato, K .
NUCLEIC ACIDS RESEARCH, 1996, 24 (02) :394-395
[6]   DIFFERENTIAL REGULATION OF TRANSFORMING GROWTH-FACTOR-BETA AND INTERLEUKIN-2 GENES IN HUMAN T-CELLS - DEMONSTRATION BY USAGE OF NOVEL COMPETITOR DNA CONSTRUCTS IN THE QUANTITATIVE POLYMERASE CHAIN-REACTION [J].
LI, B ;
SEHAJPAL, PK ;
KHANNA, A ;
VLASSARA, H ;
CERAMI, A ;
STENZEL, KH ;
SUTHANTHIRAN, M .
JOURNAL OF EXPERIMENTAL MEDICINE, 1991, 174 (05) :1259-1262
[7]   DIFFERENTIAL DISPLAY OF EUKARYOTIC MESSENGER-RNA BY MEANS OF THE POLYMERASE CHAIN-REACTION [J].
LIANG, P ;
PARDEE, AB .
SCIENCE, 1992, 257 (5072) :967-971
[8]   Molecule by molecule PCR amplification of complex DNA mixtures for direct sequencing: An approach to in vitro cloning [J].
Lukyanov, KA ;
Matz, MV ;
Bogdanova, EA ;
Gurskaya, NG ;
Lukyanov, SA .
NUCLEIC ACIDS RESEARCH, 1996, 24 (11) :2194-2195
[9]   Analysis of differential gene expression by display of 3' end restriction fragments of cDNAs [J].
Prashar, Y ;
Weissman, SM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (02) :659-663
[10]   AN IMPROVED PCR METHOD FOR WALKING IN UNCLONED GENOMIC DNA [J].
SIEBERT, PD ;
CHENCHIK, A ;
KELLOGG, DE ;
LUKYANOV, KA ;
LUKYANOV, SA .
NUCLEIC ACIDS RESEARCH, 1995, 23 (06) :1087-1088