Many motile species of bacteria are propelled by flagella, which are rigid helical filaments turned by rotary motors in the cell membrane(1-3). The motors are powered by the transmembrane gradient of protons or sodium ions. Although bacterial flagella contain many proteins, only three-MotA, MotB and FliG-participate closely in torque generation. MotA, and MotB are ion-conducting membrane proteins that: form the stator of the motor. FliG is a component of the rotor, present in about 25 copies per flagellum. It is composed of an amino-terminal domain that functions in flagellar assembly and a carboxy-terminal domain (FliG-C) that functions specifically in motor rotation. Here we report the crystal structure of FliG-C from the hyperthermophilic eubacterium Thermotoga maritima, Charged residues that are important for function, and which interact with the stator protein MotA(4,5), duster along a prominent ridge on FliG-C. On the basic; of the disposition of these residues, we present a hypothesis for the orientation of FliG-C domains in the flagellar motor, and propose a structural model for the part of the rotor that interacts with the stator.