Ensembl 2009

被引：643

作者：

Hubbard, T. J. P. ^{[1
]}

Aken, B. L. ^{[1
]}

Ayling, S. ^{[1
]}

Ballester, B. ^{[2
]}

Beal, K. ^{[2
]}

Bragin, E. ^{[1
]}

Brent, S. ^{[1
]}

Chen, Y. ^{[2
]}

Clapham, P. ^{[1
]}

Clarke, L. ^{[1
]}

Coates, G. ^{[1
]}

Fairley, S. ^{[1
]}

Fitzgerald, S. ^{[2
]}

Fernandez-Banet, J. ^{[1
]}

Gordon, L. ^{[2
]}

Graf, S. ^{[2
]}

Haider, S. ^{[2
]}

Hammond, M. ^{[2
]}

Holland, R. ^{[2
]}

Howe, K. ^{[1
]}

Jenkinson, A. ^{[2
]}

Johnson, N. ^{[2
]}

Kahari, A. ^{[2
]}

Keefe, D. ^{[2
]}

Keenan, S. ^{[2
]}

Kinsella, R. ^{[2
]}

Kokocinski, F. ^{[1
]}

Kulesha, E. ^{[2
]}

Lawson, D. ^{[2
]}

Longden, I. ^{[2
]}

Megy, K. ^{[2
]}

Meidl, P. ^{[2
]}

Overduin, B. ^{[2
]}

Parker, A. ^{[1
]}

Pritchard, B. ^{[1
]}

Rios, D. ^{[2
]}

Schuster, M. ^{[2
]}

Slater, G. ^{[2
]}

Smedley, D. ^{[2
]}

Spooner, W. ^{[2
]}

Spudich, G. ^{[2
]}

Trevanion, S. ^{[1
]}

Vilella, A. ^{[2
]}

Vogel, J. ^{[1
]}

White, S. ^{[1
]}

Wilder, S. ^{[2
]}

Zadissa, A. ^{[1
]}

Birney, E. ^{[2
]}

Cunningham, F. ^{[2
]}

Curwen, V. ^{[1
]}

机构：

[1] Wellcome Trust Sanger Inst, Cambridge CB10 1SD, England

[2] European Bioinformat Inst EMBL EBI, Cambridge CB10 1SD, England

来源：

NUCLEIC ACIDS RESEARCH | 2009年 / 37卷

基金：

美国国家卫生研究院; 英国惠康基金; 英国生物技术与生命科学研究理事会; 英国医学研究理事会;

关键词：

GENOME; DATABASE; METHYLATIONS; RESOURCE; SITES;

D O I：

10.1093/nar/gkn828

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The Ensembl project (http://www.ensembl.org) is a comprehensive genome information system featuring an integrated set of genome annotation, databases, and other information for chordate, selected model organism and disease vector genomes. As of release 51 (November 2008), Ensembl fully supports 45 species, and three additional species have preliminary support. New species in the past year include orangutan and six additional low coverage mammalian genomes. Major additions and improvements to Ensembl since our previous report include a major redesign of our website; generation of multiple genome alignments and ancestral sequences using the new Enredo-Pecan-Ortheus pipeline and development of our software infrastructure, particularly to support the Ensembl Genomes project (http://www.ensemblgenomes.org/).

引用

页码：D690 / D697

页数：8

共 38 条

[1] Progress and prospects in rat genetics: a community view
Aitman, Timothy J.
Critser, John K.
Cuppen, Edwin
Dominiczak, Anna
Fernandez-Suarez, Xose M.
Flint, Jonathan
Gauguier, Dominique
Geurts, Aron M.
Gould, Michael
Harris, Peter C.
Holmdahl, Rikard
Hubner, Norbert
Izsvak, Zsuzsanna
Jacob, Howard J.
Kuramoto, Takashi
Kwitek, Anne E.
Marrone, Anna
Mashimo, Tomoji
Moreno, Carol
Mullins, John
Mullins, Linda
Olsson, Tomas
Pravenec, Michal
Riley, Lela
Saar, Kathrin
Serikawa, Tadao
Shull, James D.
Szpirer, Claude
Twigger, Simon N.
Voigt, Birger
Worley, Kim
[J]. NATURE GENETICS, 2008, 40 (05) : 516 - 522
[2] The Universal Protein Resource (UniProt)
Bairoch, Amos
Bougueleret, Lydie
Altairac, Severine
Amendolia, Valeria
Auchincloss, Andrea
Puy, Ghislaine Argoud
Axelsen, Kristian
Baratin, Delphine
Blatter, Marie-Claude
Boeckmann, Brigitte
Bollondi, Laurent
Boutet, Emmanuel
Quintaje, Silvia Braconi
Breuza, Lionel
Bridge, Alan
Saux, Virginie Bulliard-Le
decastro, Edouard
Ciampina, Luciane
Coral, Danielle
Coudert, Elisabeth
Cusin, Isabelle
David, Fabrice
Delbard, Gwennaelle
Dornevil, Dolnide
Duek-Roggli, Paula
Duvaud, Severine
Estreicher, Anne
Famiglietti, Livia
Farriol-Mathis, Nathalie
Ferro, Serenella
Feuermann, Marc
Gasteiger, Elisabeth
Gateau, Alain
Gehant, Sebastian
Gerritsen, Vivienne
Gos, Arnaud
Gruaz-Gumowski, Nadine
Hinz, Ursula
Hulo, Chantal
Hulo, Nicolas
Innocenti, Alessandro
James, Janet
Jain, Eric
Jimenez, Silvia
Jungo, Florence
Junker, Vivien
Keller, Guillaume
Lachaize, Corinne
Lane-Guermonprez, Lydie
Langendijk-Genevaux, Petra
[J]. NUCLEIC ACIDS RESEARCH, 2008, 36 : D190 - D195
[3] High-resolution profiling of histone methylations in the human genome
Barski, Artern
Cuddapah, Suresh
Cui, Kairong
Roh, Tae-Young
Schones, Dustin E.
Wang, Zhibin
Wei, Gang
Chepelev, Iouri
Zhao, Keji
[J]. CELL, 2007, 129 (04) : 823 - 837
[4] Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Birney, Ewan
Stamatoyannopoulos, John A.
Dutta, Anindya
Guigo, Roderic
Gingeras, Thomas R.
Margulies, Elliott H.
Weng, Zhiping
Snyder, Michael
Dermitzakis, Emmanouil T.
Stamatoyannopoulos, John A.
Thurman, Robert E.
Kuehn, Michael S.
Taylor, Christopher M.
Neph, Shane
Koch, Christoph M.
Asthana, Saurabh
Malhotra, Ankit
Adzhubei, Ivan
Greenbaum, Jason A.
Andrews, Robert M.
Flicek, Paul
Boyle, Patrick J.
Cao, Hua
Carter, Nigel P.
Clelland, Gayle K.
Davis, Sean
Day, Nathan
Dhami, Pawandeep
Dillon, Shane C.
Dorschner, Michael O.
Fiegler, Heike
Giresi, Paul G.
Goldy, Jeff
Hawrylycz, Michael
Haydock, Andrew
Humbert, Richard
James, Keith D.
Johnson, Brett E.
Johnson, Ericka M.
Frum, Tristan T.
Rosenzweig, Elizabeth R.
Karnani, Neerja
Lee, Kirsten
Lefebvre, Gregory C.
Navas, Patrick A.
Neri, Fidencio
Parker, Stephen C. J.
Sabo, Peter J.
Sandstrom, Richard
Shafer, Anthony
[J]. NATURE, 2007, 447 (7146) : 799 - 816
[5] The HGNC Database in 2008: a resource for the human genome
Bruford, Elspeth A.
Lush, Michael J.
Wright, Mathew W.
Sneddon, Tam P.
Povey, Sue
Birney, Ewan
[J]. NUCLEIC ACIDS RESEARCH, 2008, 36 : D445 - D448
[6] Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
Burton, Paul R.
Clayton, David G.
Cardon, Lon R.
Craddock, Nick
Deloukas, Panos
Duncanson, Audrey
Kwiatkowski, Dominic P.
McCarthy, Mark I.
Ouwehand, Willem H.
Samani, Nilesh J.
Todd, John A.
Donnelly, Peter
Barrett, Jeffrey C.
Davison, Dan
Easton, Doug
Evans, David
Leung, Hin-Tak
Marchini, Jonathan L.
Morris, Andrew P.
Spencer, Chris C. A.
Tobin, Martin D.
Attwood, Antony P.
Boorman, James P.
Cant, Barbara
Everson, Ursula
Hussey, Judith M.
Jolley, Jennifer D.
Knight, Alexandra S.
Koch, Kerstin
Meech, Elizabeth
Nutland, Sarah
Prowse, Christopher V.
Stevens, Helen E.
Taylor, Niall C.
Walters, Graham R.
Walker, Neil M.
Watkins, Nicholas A.
Winzer, Thilo
Jones, Richard W.
McArdle, Wendy L.
Ring, Susan M.
Strachan, David P.
Pembrey, Marcus
Breen, Gerome
St Clair, David
Caesar, Sian
Gordon-Smith, Katherine
Jones, Lisa
Fraser, Christine
Green, Elain K.
[J]. NATURE, 2007, 447 (7145) : 661 - 678
[7] Distinguishing protein-coding and noncoding genes in the human genome
Clamp, Michele
Fry, Ben
Kamal, Mike
Xie, Xiaohui
Cuff, James
Lin, Michael F.
Kellis, Manolis
Lindblad-Toh, Kerstin
Lander, Eric S.
[J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (49) : 19428 - 19433
[8] Distribution and intensity of constraint in mammalian genomic sequence
Cooper, GM
Stone, EA
Asimenos, G
Green, ED
Batzoglou, S
Sidow, A
[J]. GENOME RESEARCH, 2005, 15 (07) : 901 - 913
[9] TranscriptSNPView: a genome-wide catalog of mouse coding variation
Cunningham, Fiona
Rios, Daniel
Griffiths, Mark
Smith, James
Ning, Zemin
Cox, Tony
Flicek, Paul
Marin-Garcin, Pablo
Herrero, Javier
Rogers, Jane
Van der Weyden, Louise
Bradley, Allan
Birney, Ewan
Adams, David J.
[J]. NATURE GENETICS, 2006, 38 (08) : 853 - 853
[10] Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions
Denoeud, France
Kapranov, Philipp
Ucla, Catherine
Frankish, Adam
Castelo, Robert
Drenkow, Jorg
Lagarde, Julien
Alioto, Tyler
Manzano, Caroline
Chrast, Jacqueline
Dike, Sujit
Wyss, Carine
Henrichsen, Charlotte N.
Holroyd, Nancy
Dickson, Mark C.
Taylor, Ruth
Hance, Zahra
Foissac, Sylvain
Myers, Richard M.
Rogers, Jane
Hubbard, Tim
Harrow, Jennifer
Guigo, Roderic
Gingeras, Thomas R.
Antonarakis, Stylianos E.
Reymond, Alexandre
[J]. GENOME RESEARCH, 2007, 17 (06) : 746 - 759

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