Image Cytometry: Protocols for 2D and 3D Quantification in Microscopic Images

被引:41
作者
Chieco, Pasquale [1 ]
Jonker, Ard [2 ]
De Boer, Bouke A. [3 ]
Ruijter, Jan M. [3 ]
Van Noorden, Cornelis J. F. [2 ]
机构
[1] S Orsola Malpighi Univ Hosp, Ctr Appl Biomed Res, I-40138 Bologna, Italy
[2] Univ Amsterdam, Acad Med Ctr, Dept Cell Biol & Histol, NL-1105 AZ Amsterdam, Netherlands
[3] Univ Amsterdam, Acad Med Ctr, Dept Anat Embryol & Physiol, NL-1105 AZ Amsterdam, Netherlands
关键词
IN-SITU HYBRIDIZATION; DEVELOPING MOUSE HEART; GENE-EXPRESSION; QUANTITATIVE AUTORADIOGRAPHY; SCANNING MICRODENSITOMETRY; GLUTAMATE-DEHYDROGENASE; SECTION THICKNESS; CELL-DIVISION; DNA; TISSUE;
D O I
10.1016/j.proghi.2012.09.001
中图分类号
Q2 [细胞生物学];
学科分类号
071013 [干细胞生物学];
摘要
Microscopy-based imaging is booming and the need for tools to retrieve quantitative data from images is urgent. This book provides simple but reliable tools to generate valid quantitative gene expression data, at the. mRNA, protein and activity level, from microscopic images in relation to structures in cells, tissues and organs in 2D and 3D. Volumes, areas, lengths and numbers of cells and tissues can be calculated and related to these gene expression data while preserving the 2D and 3D morphology. Image cytometry thus provides a comprehensive toolkit to study molecular processes and structural changes at the level of cells and tissues. (C) 2012 Elsevier GmbH. All rights reserved.
引用
收藏
页码:211 / 333
页数:123
相关论文
共 122 条
[1]
Adler J, 2002, IMAGE ANAL
[2]
Afework A, 1998, J AM MED INFORM ASSN, P912
[3]
Aikens R.S., 1989, METHOD CELL BIOL, V29, P291
[4]
AIKENS RS, 1990, OPTICAL MICROSCOPY FOR BIOLOGY, P207
[5]
INCREASED ACCURACY OF ABSORPTION CYTOPHOTOMETRIC DNA VALUES BY CONTROL OF STAIN INTENSITY [J].
ALLISON, DC ;
RIDOLPHO, PF ;
RASCH, EM ;
RASCH, RW ;
JOHNSON, TS .
JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY, 1981, 29 (10) :1219-1228
[6]
DANGERS OF USING OPTIMAL CUTPOINTS IN THE EVALUATION OF PROGNOSTIC FACTORS [J].
ALTMAN, DG ;
LAUSEN, B ;
SAUERBREI, W ;
SCHUMACHER, M .
JOURNAL OF THE NATIONAL CANCER INSTITUTE, 1994, 86 (11) :829-835
[7]
QUANTITATION IN HISTOCHEMISTRY - REVIEW OF SOME COMMERCIALLY AVAILABLE MICRODENSITOMETERS [J].
ALTMAN, FP .
HISTOCHEMICAL JOURNAL, 1975, 7 (04) :375-395
[8]
The quest for quantitative microscopy [J].
不详 .
NATURE METHODS, 2012, 9 (07) :627-627
[9]
[Anonymous], 1979, STEREOLOGICAL METHOD
[10]
INTERFEROMETRIC ANALYSIS OF INTRASECTION AND INTERSECTION THICKNESS VARIABILITY ASSOCIATED WITH CRYOSTAT MICROTOMY [J].
ANTHONY, A ;
COLURSO, GJ ;
BOCAN, TMA ;
DOEBLER, JA .
HISTOCHEMICAL JOURNAL, 1984, 16 (01) :61-70