Comment on "Widespread RNA and DNA Sequence Differences in the Human Transcriptome"

被引:123
作者
Pickrell, Joseph K. [1 ]
Gilad, Yoav [1 ]
Pritchard, Jonathan K. [1 ,2 ]
机构
[1] Univ Chicago, Dept Human Genet, Chicago, IL 60637 USA
[2] Univ Chicago, Howard Hughes Med Inst, Chicago, IL 60637 USA
关键词
IDENTIFICATION; ERROR;
D O I
10.1126/science.1210484
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
引用
收藏
页数:3
相关论文
共 12 条
[1]   A map of human genome variation from population-scale sequencing [J].
Altshuler, David ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Collins, Francis S. ;
De la Vega, Francisco M. ;
Donnelly, Peter ;
Egholm, Michael ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Knoppers, Bartha M. ;
Lander, Eric S. ;
Lehrach, Hans ;
Mardis, Elaine R. ;
McVean, Gil A. ;
Nickerson, DebbieA. ;
Peltonen, Leena ;
Schafer, Alan J. ;
Sherry, Stephen T. ;
Wang, Jun ;
Wilson, Richard K. ;
Gibbs, Richard A. ;
Deiros, David ;
Metzker, Mike ;
Muzny, Donna ;
Reid, Jeff ;
Wheeler, David ;
Wang, Jun ;
Li, Jingxiang ;
Jian, Min ;
Li, Guoqing ;
Li, Ruiqiang ;
Liang, Huiqing ;
Tian, Geng ;
Wang, Bo ;
Wang, Jian ;
Wang, Wei ;
Yang, Huanming ;
Zhang, Xiuqing ;
Zheng, Huisong ;
Lander, Eric S. ;
Altshuler, David L. ;
Ambrogio, Lauren ;
Bloom, Toby ;
Cibulskis, Kristian ;
Fennell, Tim J. ;
Gabriel, Stacey B. .
NATURE, 2010, 467 (7319) :1061-1073
[2]   RNA editing by adenosine deaminases that act on RNA [J].
Bass, BL .
ANNUAL REVIEW OF BIOCHEMISTRY, 2002, 71 :817-846
[3]   Origins and functional impact of copy number variation in the human genome [J].
Conrad, Donald F. ;
Pinto, Dalila ;
Redon, Richard ;
Feuk, Lars ;
Gokcumen, Omer ;
Zhang, Yujun ;
Aerts, Jan ;
Andrews, T. Daniel ;
Barnes, Chris ;
Campbell, Peter ;
Fitzgerald, Tomas ;
Hu, Min ;
Ihm, Chun Hwa ;
Kristiansson, Kati ;
MacArthur, Daniel G. ;
MacDonald, Jeffrey R. ;
Onyiah, Ifejinelo ;
Pang, Andy Wing Chun ;
Robson, Sam ;
Stirrups, Kathy ;
Valsesia, Armand ;
Walter, Klaudia ;
Wei, John ;
Tyler-Smith, Chris ;
Carter, Nigel P. ;
Lee, Charles ;
Scherer, Stephen W. ;
Hurles, Matthew E. .
NATURE, 2010, 464 (7289) :704-712
[4]   A framework for variation discovery and genotyping using next-generation DNA sequencing data [J].
DePristo, Mark A. ;
Banks, Eric ;
Poplin, Ryan ;
Garimella, Kiran V. ;
Maguire, Jared R. ;
Hartl, Christopher ;
Philippakis, Anthony A. ;
del Angel, Guillermo ;
Rivas, Manuel A. ;
Hanna, Matt ;
McKenna, Aaron ;
Fennell, Tim J. ;
Kernytsky, Andrew M. ;
Sivachenko, Andrey Y. ;
Cibulskis, Kristian ;
Gabriel, Stacey B. ;
Altshuler, David ;
Daly, Mark J. .
NATURE GENETICS, 2011, 43 (05) :491-+
[5]   Alta-Cyclic: a selfoptimizing base caller for next-generation sequencing [J].
Erlich, Yaniv ;
Mitra, Partha P. ;
delaBastide, Melissa ;
McCombie, W. Richard ;
Hannon, Gregory J. .
NATURE METHODS, 2008, 5 (08) :679-682
[6]   DARNED: a DAtabase of RNa EDiting in humans [J].
Kiran, Anmol ;
Baranov, Pavel V. .
BIOINFORMATICS, 2010, 26 (14) :1772-1776
[7]   Mapping short DNA sequencing reads and calling variants using mapping quality scores [J].
Li, Heng ;
Ruan, Jue ;
Durbin, Richard .
GENOME RESEARCH, 2008, 18 (11) :1851-1858
[8]   Fast and accurate short read alignment with Burrows-Wheeler transform [J].
Li, Heng ;
Durbin, Richard .
BIOINFORMATICS, 2009, 25 (14) :1754-1760
[9]   Genome-Wide Identification of Human RNA Editing Sites by Parallel DNA Capturing and Sequencing [J].
Li, Jin Billy ;
Levanon, Erez Y. ;
Yoon, Jung-Ki ;
Aach, John ;
Xie, Bin ;
LeProust, Emily ;
Zhang, Kun ;
Gao, Yuan ;
Church, George M. .
SCIENCE, 2009, 324 (5931) :1210-1213
[10]   Widespread RNA and DNA Sequence Differences in the Human Transcriptome [J].
Li, Mingyao ;
Wang, Isabel X. ;
Li, Yun ;
Bruzel, Alan ;
Richards, Allison L. ;
Toung, Jonathan M. ;
Cheung, Vivian G. .
SCIENCE, 2011, 333 (6038) :53-58