Influence of the crystalline state on photoinduced dynamics of photoactive yellow protein studied by ultraviolet-visible transient absorption spectroscopy

被引:46
作者
Yeremenko, Sergey
van Stokkum, Ivo H. M.
Moffat, Keith
Hellingwerf, Klaas J.
机构
[1] Univ Amsterdam, Swammerdam Inst Life Sci, Microbiol Lab, NL-1018 WV Amsterdam, Netherlands
[2] Free Univ Amsterdam, Fac Sci, Dept Biophys, NL-1081 HV Amsterdam, Netherlands
[3] Univ Chicago, Dept Biochem & Mol Biol, Chicago, IL 60637 USA
[4] Univ Chicago, Inst Biophys Dynam, Chicago, IL 60637 USA
关键词
D O I
10.1529/biophysj.105.074765
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Time-resolved ultraviolet-visible spectroscopy was used to characterize the photocycle transitions in single crystals of wild-type and the E-46Q mutant of photoactive yellow protein (PYP) with microsecond time resolution. The results were compared with the results of similar measurements on aqueous solutions of these two variants of PYP, with and without the components present in the mother liquor of crystals. The experimental data were analyzed with global and target analysis. Distinct differences in the reaction path of a PYP molecule are observed between these conditions when it progresses through its photocycle. In the crystalline state i), much faster relaxation of the late blue-shifted photocycle intermediate back to the ground state is observed; ii), this intermediate in crystalline PYP absorbs at 380 nm, rather than at 350-360 nm in solution; and iii), for various intermediates of this photocycle the forward reaction through the photocycle directly competes with a branching reaction that leads directly to the ground state. Significantly, with these altered characteristics, the spectroscopic data on PYP are fully consistent with the structural data obtained for this photoreceptor protein with time-resolved x-ray diffraction analysis, particularly for wild-type PYP.
引用
收藏
页码:4224 / 4235
页数:12
相关论文
共 53 条
[1]   Structural heterogeneity of cryotrapped intermediates in the bacterial blue light photoreceptor, photoactive yellow protein [J].
Anderson, S ;
Srajer, V ;
Moffat, K .
PHOTOCHEMISTRY AND PHOTOBIOLOGY, 2004, 80 (01) :7-14
[2]   Short hydrogen bonds in photoactive yellow protein [J].
Anderson, S ;
Crosson, S ;
Moffat, K .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :1008-1016
[3]   Chromophore conformation and the evolution of tertiary structural changes in photoactive yellow protein [J].
Anderson, S ;
Srajer, V ;
Pahl, R ;
Rajagopal, S ;
Schotte, F ;
Anfinrud, P ;
Wulff, M ;
Moffat, K .
STRUCTURE, 2004, 12 (06) :1039-1045
[4]   The primary events in the photoactivation of yellow protein [J].
Baltuska, A ;
vanStokkum, IHM ;
Kroon, A ;
Monshouwer, R ;
Hellingwerf, KJ ;
vanGrondelle, R .
CHEMICAL PHYSICS LETTERS, 1997, 270 (3-4) :263-266
[5]   The solution structure of a transient photoreceptor intermediate:: Δ25 photoactive yellow protein [J].
Bernard, C ;
Houben, K ;
Derix, NM ;
Marks, D ;
van der Horst, MA ;
Hellingwerf, KJ ;
Boelens, R ;
Kaptein, R ;
van Nuland, NAJ .
STRUCTURE, 2005, 13 (07) :953-962
[6]   pH dependence of the photocycle kinetics of the E46Q mutant of photoactive yellow protein:: Protonation equilibrium between I1 and I2 intermediates, chromophore deprotonation by hydroxyl uptake, and protonation relaxation of the dark state [J].
Borucki, B ;
Otto, H ;
Joshi, CP ;
Gasperi, C ;
Cusanovich, MA ;
Devanathan, S ;
Tollin, G ;
Heyn, MP .
BIOCHEMISTRY, 2003, 42 (29) :8780-8790
[7]   Structure of the I1 early intermediate of photoactive yellow protein by FTIR spectroscopy [J].
Brudler, R ;
Rammelsberg, R ;
Woo, TT ;
Getzoff, ED ;
Gerwert, K .
NATURE STRUCTURAL BIOLOGY, 2001, 8 (03) :265-270
[8]   Dynamics of protein and chromophore structural changes in the photocycle of photoactive yellow protein monitored by time-resolved optical rotatory dispersion [J].
Chen, EF ;
Gensch, T ;
Gross, AB ;
Hendriks, J ;
Hellingwerf, KJ ;
Kliger, DS .
BIOCHEMISTRY, 2003, 42 (07) :2062-2071
[9]   X-ray synchrotron studies of ultrafast crystalline dynamics [J].
DeCamp, MF ;
Reis, DA ;
Fritz, DM ;
Bucksbaum, PH ;
Dufresne, EM ;
Clarke, R .
JOURNAL OF SYNCHROTRON RADIATION, 2005, 12 :177-192
[10]   Lack of negative charge in the E46Q mutant of photoactive yellow protein prevents partial unfolding of the blue-shifted intermediate [J].
Derix, NM ;
Wechselberger, RW ;
van der Horst, MA ;
Hellingwerf, KJ ;
Boelens, R ;
Kaptein, R ;
van Nuland, NAJ .
BIOCHEMISTRY, 2003, 42 (49) :14501-14506