Cations in charge: magnesium ions in RNA folding and catalysis

被引:162
作者
Bowman, Jessica C. [1 ]
Lenz, Timothy K. [1 ]
Hud, Nicholas V. [1 ]
Williams, Loren Dean [1 ]
机构
[1] Georgia Inst Technol, Sch Chem & Biochem, Parker H Petit Inst Bioengn & Biosci, Ctr Ribosomal Origins & Evolut, Atlanta, GA 30332 USA
关键词
ENERGY DECOMPOSITION ANALYSIS; LARGE RIBOSOMAL-SUBUNIT; INNER-SPHERE COMPLEXES; METAL-IONS; STRUCTURAL BASIS; MONOVALENT CATIONS; RIBOZYME DOMAIN; SHAPE CHEMISTRY; BINDING-SITES; AMMONIUM-IONS;
D O I
10.1016/j.sbi.2012.04.006
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
[No abstract available]
引用
收藏
页码:262 / 272
页数:11
相关论文
共 88 条
[1]
Electrostatics of Nucleic Acid Folding under Conformational Constraint [J].
Anthony, Peter C. ;
Sim, Adelene Y. L. ;
Chu, Vincent B. ;
Doniach, Sebastian ;
Block, Steven M. ;
Herschlag, Daniel .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (10) :4607-4614
[2]
Domain III of the T. thermophilus 23S rRNA folds independently to a near-native state [J].
Athavale, Shreyas S. ;
Gossett, J. Jared ;
Hsiao, Chiaolong ;
Bowman, Jessica C. ;
O'Neill, Eric ;
Hershkovitz, Eli ;
Preeprem, Thanawadee ;
Hud, Nicholas V. ;
Wartell, Roger M. ;
Harvey, Stephen C. ;
Williams, Loren Dean .
RNA, 2012, 18 (04) :752-758
[3]
Auffinger P, 2011, METAL IONS LIFE SCI, V9, P1, DOI 10.1039/978184973251200001
[4]
The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution [J].
Ban, N ;
Nissen, P ;
Hansen, J ;
Moore, PB ;
Steitz, TA .
SCIENCE, 2000, 289 (5481) :905-920
[5]
Theoretical studies of RNA catalysis: Hybrid QM/MM methods and their comparison with MD and QM [J].
Banas, Pavel ;
Jurecka, Petr ;
Walter, Nils G. ;
Sponer, Jiri ;
Otyepka, Michal .
METHODS, 2009, 49 (02) :202-216
[6]
Base C.F., 1976, The hydrolysis of cations
[7]
Manganese as a replacement for magnesium and zinc: Functional comparison of the divalent ions [J].
Bock, CW ;
Katz, AK ;
Markham, GD ;
Glusker, JP .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (32) :7360-7372
[8]
The arrangement of first- and second-shell water molecules around metal ions: effects of charge and size [J].
Bock, CW ;
Markham, GD ;
Katz, AK ;
Glusker, JP .
THEORETICAL CHEMISTRY ACCOUNTS, 2006, 115 (2-3) :100-112
[9]
Hierarchy and dynamics of RNA folding [J].
Brion, P ;
Westhof, E .
ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE, 1997, 26 :113-137
[10]
Rapid Steps in the glmS Ribozyme Catalytic Pathway: Cation and Ligand Requirements [J].
Brooks, Krista M. ;
Hampel, Ken J. .
BIOCHEMISTRY, 2011, 50 (13) :2424-2433