Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses

被引:120
作者
Brum, Jennifer R. [1 ]
Schenck, Ryan O. [1 ]
Sullivan, Matthew B. [1 ]
机构
[1] Univ Arizona, Dept Ecol & Evolutionary Biol, Tucson, AZ 85721 USA
关键词
biogeography; diversity; marine viruses; seawater; viral morphology; SINGLE-STRANDED-DNA; ELECTRON-MICROSCOPY; PHOTOSYNTHESIS GENES; HIGH ABUNDANCE; OCEAN VIRUSES; CYANOPHAGES; DIVERSITY; GENOME; PHAGE; BLOOM;
D O I
10.1038/ismej.2013.67
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
Viruses influence oceanic ecosystems by causing mortality of microorganisms, altering nutrient and organic matter flux via lysis and auxiliary metabolic gene expression and changing the trajectory of microbial evolution through horizontal gene transfer. Limited host range and differing genetic potential of individual virus types mean that investigations into the types of viruses that exist in the ocean and their spatial distribution throughout the world's oceans are critical to understanding the global impacts of marine viruses. Here we evaluate viral morphological characteristics (morphotype, capsid diameter and tail length) using a quantitative transmission electron microscopy (qTEM) method across six of the world's oceans and seas sampled through the Tara Oceans Expedition. Extensive experimental validation of the qTEM method shows that neither sample preservation nor preparation significantly alters natural viral morphological characteristics. The global sampling analysis demonstrated that morphological characteristics did not vary consistently with depth (surface versus deep chlorophyll maximum waters) or oceanic region. Instead, temperature, salinity and oxygen concentration, but not chlorophyll a concentration, were more explanatory in evaluating differences in viral assemblage morphological characteristics. Surprisingly, given that the majority of cultivated bacterial viruses are tailed, non-tailed viruses appear to numerically dominate the upper oceans as they comprised 51-92% of the viral particles observed. Together, these results document global marine viral morphological characteristics, show that their minimal variability is more explained by environmental conditions than geography and suggest that non-tailed viruses might represent the most ecologically important targets for future research.
引用
收藏
页码:1738 / 1751
页数:14
相关论文
共 123 条
[1]  
Abramoff M.D., 2004, Biophotonics International, V11, P36
[2]   5500 Phages examined in the electron microscope [J].
Ackermann, H. -W. .
ARCHIVES OF VIROLOGY, 2007, 152 (02) :227-243
[3]  
Ackermann H-W., 2010, MANUAL AQUATIC VIRAL, P182, DOI [10.4319/mave.2010.978-0-9845591-0-7.182, DOI 10.4319/MAVE.2010.978-0-9845591-0-7.182]
[4]   Frequency of morphological phage descriptions in the year 2000 [J].
Ackermann, HW .
ARCHIVES OF VIROLOGY, 2001, 146 (05) :843-857
[5]   Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses [J].
Allers, Elke ;
Moraru, Cristina ;
Duhaime, Melissa B. ;
Beneze, Erica ;
Solonenko, Natalie ;
Barrero-Canosa, Jimena ;
Amann, Rudolf ;
Sullivan, Matthew B. .
ENVIRONMENTAL MICROBIOLOGY, 2013, 15 (08) :2306-2318
[6]   Hydroxyapatite-Mediated Separation of Double-Stranded DNA, Single-Stranded DNA, and RNA Genomes from Natural Viral Assemblages [J].
Andrews-Pfannkoch, Cynthia ;
Fadrosh, Douglas W. ;
Thorpe, Joyce ;
Williamson, Shannon J. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2010, 76 (15) :5039-5045
[7]   The marine viromes of four oceanic regions [J].
Angly, Florent E. ;
Felts, Ben ;
Breitbart, Mya ;
Salamon, Peter ;
Edwards, Robert A. ;
Carlson, Craig ;
Chan, Amy M. ;
Haynes, Matthew ;
Kelley, Scott ;
Liu, Hong ;
Mahaffy, Joseph M. ;
Mueller, Jennifer E. ;
Nulton, Jim ;
Olson, Robert ;
Parsons, Rachel ;
Rayhawk, Steve ;
Suttle, Curtis A. ;
Rohwer, Forest .
PLOS BIOLOGY, 2006, 4 (11) :2121-2131
[8]  
[Anonymous], 2011, R LANG ENV STAT COMP
[9]   Global network of specific virus-host interactions in hypersaline environments [J].
Atanasova, Nina S. ;
Roine, Elina ;
Oren, Aharon ;
Bamford, Dennis H. ;
Oksanen, Hanna M. .
ENVIRONMENTAL MICROBIOLOGY, 2012, 14 (02) :426-440
[10]   Micromonas pusilla reovirus:: a new member of the family Reoviridae assigned to a novel proposed genus (Mimoreovirus) [J].
Attoui, H ;
Jaafar, FM ;
Belhouchet, M ;
de Micco, P ;
de Lamballerie, X ;
Brussaard, CPD .
JOURNAL OF GENERAL VIROLOGY, 2006, 87 :1375-1383