Determinants of the Unexpected Stability of RNA Fluorobenzene Self Pairs

被引:31
作者
Kopitz, Hannes [2 ]
Zivkovic, Aleksandra [1 ]
Engels, Joachim W. [1 ]
Gohlke, Holger [2 ]
机构
[1] Goethe Univ Frankfurt, Fachbereich Biochem Chem & Pharm, D-60438 Frankfurt, Germany
[2] Univ Kiel, Inst Pharm, D-24118 Kiel, Germany
关键词
fluorine; molecular dynamics; molecular recognition; RNA structures; thermodynamics;
D O I
10.1002/cbic.200800461
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
[No abstract available]
引用
收藏
页码:2619 / 2622
页数:4
相关论文
共 54 条
[1]  
[Anonymous], 2006, ANGEW CHEM, V118, P4305
[2]  
Bach A, 2000, Z KRISTALLOGR, V215, P518
[3]   Charge density and topological analysis of pentafluorobenzoic acid [J].
Bach, A ;
Lentz, D ;
Luger, P .
JOURNAL OF PHYSICAL CHEMISTRY A, 2001, 105 (31) :7405-7412
[4]   1-Deoxy-1-(4-fluorophenyl)-β-D-ribofuranose, its hemihydrate, and 1-deoxy-1-(2,4-difluorophenyl)-β-D-ribofuranose:: structural evidence for intermolecular C-H•••F-C interactions [J].
Bats, JW ;
Parsch, J ;
Engels, JW .
ACTA CRYSTALLOGRAPHICA SECTION C-STRUCTURAL CHEMISTRY, 2000, 56 :201-205
[5]  
BEVERIDGE DL, 1989, ANNU REV BIOPHYS BIO, V18, P431, DOI 10.1146/annurev.biophys.18.1.431
[6]   The polar hydrophobicity of fluorinated compounds [J].
Biffinger, JC ;
Kim, HW ;
DiMagno, SG .
CHEMBIOCHEM, 2004, 5 (05) :622-627
[7]   THE MEANING OF COMPONENT ANALYSIS - DECOMPOSITION OF THE FREE-ENERGY IN TERMS OF SPECIFIC INTERACTIONS [J].
BORESCH, S ;
KARPLUS, M .
JOURNAL OF MOLECULAR BIOLOGY, 1995, 254 (05) :801-807
[8]   Synthesis and structure of fluoroindole nucleosides [J].
Bozilovic, Jelena ;
Bats, Jan W. ;
Engels, Joachim W. .
CANADIAN JOURNAL OF CHEMISTRY, 2007, 85 (04) :283-292
[9]   PREDICTING DNA DUPLEX STABILITY FROM THE BASE SEQUENCE [J].
BRESLAUER, KJ ;
FRANK, R ;
BLOCKER, H ;
MARKY, LA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1986, 83 (11) :3746-3750
[10]   The Amber biomolecular simulation programs [J].
Case, DA ;
Cheatham, TE ;
Darden, T ;
Gohlke, H ;
Luo, R ;
Merz, KM ;
Onufriev, A ;
Simmerling, C ;
Wang, B ;
Woods, RJ .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2005, 26 (16) :1668-1688