Understanding bistability in complex enzyme-driven reaction networks

被引:219
作者
Craciun, Gheorghe
Tang, Yangzhong
Feinberg, Martin
机构
[1] Ohio State Univ, Dept Chem Engn, Columbus, OH 43210 USA
[2] Ohio State Univ, Dept Math, Columbus, OH 43210 USA
[3] Ohio State Univ, Math Biosci Inst, Columbus, OH 43210 USA
[4] Univ Wisconsin, Dept Math, Madison, WI 53706 USA
[5] Univ Wisconsin, Dept Biomol Engn, Madison, WI 53706 USA
关键词
bistability; dihydrofolate reductase;
D O I
10.1073/pnas.0602767103
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Much attention has been paid recently to bistability and switch-like behavior that might be resident in important biochemical reaction networks. There is, in fact, a great deal of subtlety in the relationship between the structure of a reaction network and its capacity to engender bistability. In common physicochemical settings, large classes of extremely complex networks, taken with mass action kinetics, cannot give rise to bistability no matter what values the rate constants take. On the other hand, bistable behavior can be induced in those same settings by certain very simple and classical mass action mechanisms for enzyme catalysis of a single overall reaction. We present a theorem that distinguishes between those mass action networks that might support bistable behavior and those that cannot. Moreover, we indicate how switch-like behavior results from a well-studied mechanism for the action of human dihydrofolate reductase, an important anti-cancer target.
引用
收藏
页码:8697 / 8702
页数:6
相关论文
共 23 条
[1]  
APPLEMAN JR, 1990, J BIOL CHEM, V265, P2740
[2]   Kinetic analysis of a molecular model of the budding yeast cell cycle [J].
Chen, KC ;
Csikasz-Nagy, A ;
Gyorffy, B ;
Val, J ;
Novak, B ;
Tyson, JJ .
MOLECULAR BIOLOGY OF THE CELL, 2000, 11 (01) :369-391
[3]   The cyclin-dependent kinases cdk2 and cdk5 act by a random, anticooperative kinetic mechanism [J].
Clare, PM ;
Poorman, RA ;
Kelley, LC ;
Watenpaugh, KD ;
Bannow, CA ;
Leach, KL .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (51) :48292-48299
[4]   Multiple equilibria in complex chemical reaction networks: I. The injectivity property [J].
Craciun, G ;
Feinberg, M .
SIAM JOURNAL ON APPLIED MATHEMATICS, 2005, 65 (05) :1526-1546
[5]  
CRACIUN G, 2006, IN PRESS IEE P SYST
[6]  
Craciun G., 2002, THESIS OHIO STATE U
[7]   Multiple equilibria in complex chemical reaction networks: II. The species-reaction graph [J].
Craciun, Gheorghe ;
Feinberg, Martin .
SIAM JOURNAL ON APPLIED MATHEMATICS, 2006, 66 (04) :1321-1338
[8]   Testing a mathematical model of the yeast cell cycle [J].
Cross, FR ;
Archambault, V ;
Miller, M ;
Klovstad, M .
MOLECULAR BIOLOGY OF THE CELL, 2002, 13 (01) :52-70
[9]   How catalytic mechanisms reveal themselves in multiple steady-state data: I. Basic principles [J].
Ellison, P ;
Feinberg, M .
JOURNAL OF MOLECULAR CATALYSIS A-CHEMICAL, 2000, 154 (1-2) :155-167