Development and validation of a hydrophilic interaction liquid chromatography-tandem mass spectrometry method for the quantification of lipid-related extracellular metabolites in Saccharomyces cerevisiae

被引:13
作者
Sun, Tao [2 ]
Wetzel, Stephanie J. [2 ]
Johnson, Mitchell E. [2 ]
Surlow, Beth A. [1 ]
Patton-Vogt, Jana [1 ]
机构
[1] Duquesne Univ, Dept Biol Sci, Pittsburgh, PA 15282 USA
[2] Duquesne Univ, Dept Chem & Biochem, Pittsburgh, PA 15282 USA
来源
JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES | 2012年 / 897卷
基金
美国国家科学基金会;
关键词
HILIC-MS/MS; Glycerophospholipid metabolites; Metabolomics; Saccharomyces cerevisiae; Metabolic footprinting; FUNCTIONAL GENOMICS; GENE DISRUPTION; BUDDING YEAST; IN-VIVO; METABOLOMICS; PHOSPHATIDYLCHOLINE; GLYCEROPHOSPHOINOSITOL; MUTANTS; SEPARATION; TURNOVER;
D O I
10.1016/j.jchromb.2012.03.034
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
A highly sensitive hydrophilic interaction liquid chromatography-tandem mass spectrometry (HILIC-MS/MS) method was developed and validated for the quantification of glycerophosphoinositol (GroPIns), glycerophosphocholine (GroPCho), glycerol 3-phosphate (GroP), inositol, and choline in the extracellular medium of Saccharomyces cerevisiae. The media samples were pretreated with a single two-phase liquid extraction. Chromatographic separation was achieved on a Waters Xbridge HILIC (150 mm x 4.6 mm, 5 mu m) column under isocratic conditions using a mobile phase composed of acetonitrile/water, 70:30 (v/v) with 10 mM ammonium acetate (pH adjusted to 4.5) at a flow-rate of 0.5 mL/min. Using a triple quadrupole tandem mass spectrometer, samples were detected in multiple reaction monitoring (MRM) mode via an electrospray ionization (ESI) source. The calibration curves were linear (r(2) >= 0.995) over the range of 0.5-150 nM, with the lower limit of quantitation validated at 0.5 nM for all analytes. The intra- and inter-day precision (calculated by coefficient of variation, CV%) ranged from 1.24 to 5.88% and 2.46 to 9.77%, respectively, and intra- and inter-day accuracy (calculated by relative error, RE%) was between -8.42 to 8.22% and -9.35 to 6.62%, respectively, at all quality control levels. The extracellular metabolites were stable throughout various storage stability studies. The fully validated method was successfully applied to determine the extracellular levels of phospholipid-related metabolites in S. cerevisiae. (C) 2012 Elsevier B.V. All rights reserved.
引用
收藏
页码:1 / 9
页数:9
相关论文
共 46 条
[1]   High-throughput classification of yeast mutants for functional genomics using metabolic footprinting [J].
Allen, J ;
Davey, HM ;
Broadhurst, D ;
Heald, JK ;
Rowland, JJ ;
Oliver, SG ;
Kell, DB .
NATURE BIOTECHNOLOGY, 2003, 21 (06) :692-696
[2]   Discrimination of modes of action of antifungal substances by use of metabolic footprinting [J].
Allen, J ;
Davey, HM ;
Broadhurst, D ;
Rowland, JJ ;
Oliver, SG ;
Kell, DB .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 70 (10) :6157-6165
[3]   Separation and quantitation of water soluble cellular metabolites by hydrophilic interaction chromatography-tandem mass spectrometry [J].
Bajad, Sunil U. ;
Lu, Wenyun ;
Kimball, Elizabeth H. ;
Yuan, Jie ;
Peterson, Celeste ;
Rabinowitz, Joshua D. .
JOURNAL OF CHROMATOGRAPHY A, 2006, 1125 (01) :76-88
[4]   LC-MS analysis of phospholipids and lysophospholipids in human bronchoalveolar lavage fluid [J].
Barroso, B ;
Bischoff, R .
JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, 2005, 814 (01) :21-28
[5]   Current and emerging mass-spectrometry technologies for metabolomics [J].
Bedair, Mohamed ;
Sumner, Lloyd W. .
TRAC-TRENDS IN ANALYTICAL CHEMISTRY, 2008, 27 (03) :238-250
[6]   Potential of metabolomics as a functional genomics tool [J].
Bino, RJ ;
Hall, RD ;
Fiehn, O ;
Kopka, J ;
Saito, K ;
Draper, J ;
Nikolau, BJ ;
Mendes, P ;
Roessner-Tunali, U ;
Beale, MH ;
Trethewey, RN ;
Lange, BM ;
Wurtele, ES ;
Sumner, LW .
TRENDS IN PLANT SCIENCE, 2004, 9 (09) :418-425
[7]   A metabolome pipeline: from concept to data to knowledge [J].
Brown, Marie ;
Dunn, Warwick B. ;
Ellis, David I. ;
Goodacre, Royston ;
Handl, Julia ;
Knowles, Joshua D. ;
O'Hagan, Steve ;
Spasic, Irena ;
Kell, Douglas B. .
METABOLOMICS, 2005, 1 (01) :39-51
[8]   Phosphatidic acid plays a central role in the transcriptional regulation of glycerophospholipid synthesis in Saccharomyces cerevisiae [J].
Carman, George M. ;
Henry, Susan A. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2007, 282 (52) :37293-37297
[9]   Regulation of Phospholipid Synthesis in the Yeast Saccharomyces cerevisiae [J].
Carman, George M. ;
Han, Gil-Soo .
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 80, 2011, 80 :859-883