Fast and faster:: A designed variant of the B-domain of protein A folds in 3 μsec

被引:62
作者
Arora, P
Oas, TG
Myers, JK
机构
[1] Vanderbilt Univ, Ctr Med, Dept Biochem, Nashville, TN 37232 USA
[2] Duke Univ, Med Ctr, Dept Chem, Durham, NC 27710 USA
[3] Duke Univ, Med Ctr, Dept Biochem, Durham, NC 27710 USA
关键词
rapid protein folding; mutation; denaturant; helix propensity; dynamic NMR;
D O I
10.1110/ps.03541304
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We have introduced the mutation glycine 29 to alanine, designed to increase the rate of protein folding, into the B-domain of protein A (BdpA). From NMR lineshape analysis, we find the G29A mutation increases the folding rate constant by threefold; the folding time is 3 musec. Although wild-type BdpA folds extremely fast. simple-point mutations can still speed up the foldin- thus, the folding rate is not evolutionarily maximized. The short folding time of G29A BdpA (the shortest time yet reported) makes it an attractive candidate for an all-atom molecular dynamics simulation that could potentially show a complete folding reaction starting from an extended chain. We also constructed a fluorescent variant of BdpA by mutating phenylalanine 13 to tryptophan, allowing fluorescence-based time-resolved temperature-jump measurements. Temperature jumps and NMR complement each other, and give a very complete picture of the folding kinetics.
引用
收藏
页码:847 / 853
页数:7
相关论文
共 45 条
  • [1] Microsecond protein folding through a compact transition state
    Burton, RE
    Huang, GS
    Daugherty, MA
    Fullbright, PW
    Oas, TG
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1996, 263 (02) : 311 - 322
  • [2] DIMITRIADIS G, 2004, IN PRESS P NATL ACAD
  • [3] Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution
    Duan, Y
    Kollman, PA
    [J]. SCIENCE, 1998, 282 (5389) : 740 - 744
  • [4] Fast kinetics and mechanisms in protein folding
    Eaton, WA
    Muñoz, V
    Hagen, SJ
    Jas, GS
    Lapidus, LJ
    Henry, ER
    Hofrichter, J
    [J]. ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE, 2000, 29 : 327 - 359
  • [5] Early events in protein folding
    Ferguson, N
    Fersht, AR
    [J]. CURRENT OPINION IN STRUCTURAL BIOLOGY, 2003, 13 (01) : 75 - 81
  • [6] Rapid folding with and without populated intermediates in the homologous four-helix proteins Im7 and Im9
    Ferguson, N
    Capaldi, AP
    James, R
    Kleanthous, C
    Radford, SE
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1999, 286 (05) : 1597 - 1608
  • [7] Ultrafast folding of WW domains without structured aromatic clusters in the denatured state
    Ferguson, N
    Johnson, CM
    Macias, M
    Oschkinat, H
    Fersht, A
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (23) : 13002 - 13007
  • [8] Fersht A., 1999, STRUCTURE MECH PROTE
  • [9] Folding a protein in a computer:: An atomic description of the folding/unfolding of protein A
    García, AE
    Onuchic, JN
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (24) : 13898 - 13903
  • [10] The fast protein folding problem
    Gruebele, M
    [J]. ANNUAL REVIEW OF PHYSICAL CHEMISTRY, 1999, 50 : 485 - 516