Atomic motion in enzymatic reaction coordinates

被引:64
作者
Schramm, VL [1 ]
Shi, WX [1 ]
机构
[1] Yeshiva Univ Albert Einstein Coll Med, Dept Biochem, Bronx, NY 10461 USA
基金
美国国家卫生研究院;
关键词
D O I
10.1016/S0959-440X(01)00269-X
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Atomic excursions of reactants in enzymatic catalytic sites can be estimated from high-resolution crystal structures of enzyme complexes with substrates, transition state analog inhibitors and products. Transition state structures, defined from kinetic isotope effect studies, are compared to crystallographic structures to validate the properties of the transition state analog. Atomic excursions in enzymatic catalytic sites can differ from those in solution and define the role of the enzymatic catalyst in directing atomic motion.
引用
收藏
页码:657 / 665
页数:9
相关论文
共 51 条
[1]   Correlated conformational fluctuations during enzymatic catalysis: Implications for catalytic rate enhancement [J].
Alper, KO ;
Singla, M ;
Stone, JL ;
Bagdassarian, CK .
PROTEIN SCIENCE, 2001, 10 (07) :1319-1330
[2]   Purine nucleoside phosphorylase inhibitor BCX-1777 (immucillin-H) - a novel potent and orally active immunosuppressive agent [J].
Bantia, S ;
Miller, PJ ;
Parker, CD ;
Ananth, SL ;
Horn, LL ;
Kilpatrick, JM ;
Morris, PE ;
Hutchison, TL ;
Montgomery, JA ;
Sandhu, JS .
INTERNATIONAL IMMUNOPHARMACOLOGY, 2001, 1 (06) :1199-1210
[3]   COMPLETE KINETIC ISOTOPE EFFECT DESCRIPTION OF TRANSITION-STATES FOR ACID-CATALYZED HYDROLYZES OF METHYL ALPHA-GLUCOPYRANOSIDES AND BETA-GLUCOPYRANOSIDES [J].
BENNET, AJ ;
SINNOTT, ML .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1986, 108 (23) :7287-7294
[4]  
Berti PJ, 1999, METHOD ENZYMOL, V308, P355
[5]   CYTIDINE DEAMINASE - THE 2-CENTER-DOT-3-ANGSTROM CRYSTAL-STRUCTURE OF AN ENZYME - TRANSITION-STATE ANALOG COMPLEX [J].
BETTS, L ;
XIANG, SB ;
SHORT, SA ;
WOLFENDEN, R ;
CARTER, CW .
JOURNAL OF MOLECULAR BIOLOGY, 1994, 235 (02) :635-656
[6]   Computational enzymology [J].
Bruice, TC ;
Kahn, K .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2000, 4 (05) :540-544
[7]   Complementary truncations of a hydrogen bond to ribose involved in transition-state stabilization by cytidine deaminase [J].
Carlow, DC ;
Short, SA ;
Wolfenden, R .
BIOCHEMISTRY, 1998, 37 (05) :1199-1203
[8]   Ricin A-chain: Kinetic isotope effects and transition state structure with stem-loop RNA [J].
Chen, XY ;
Berti, PJ ;
Schramm, VL .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (08) :1609-1617
[9]   Transition-state analysis for depurination of DNA by ricin A-chain [J].
Chen, XY ;
Berti, PJ ;
Schramm, VL .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (28) :6527-6534
[10]  
Cleland WW, 1999, BIOM HLTH R, V27, P8