Genome-wide association studies to advance our understanding of critical cell types and pathways in rheumatoid arthritis: recent findings and challenges

被引:46
作者
Diogo, Dorothee [1 ,2 ,3 ]
Okada, Yukinori [1 ,2 ,3 ]
Plenge, Robert M. [1 ,2 ,3 ,4 ]
机构
[1] Harvard Univ, Brigham & Womens Hosp, Sch Med, Div Rheumatol, Boston, MA 02115 USA
[2] Harvard Univ, Brigham & Womens Hosp, Sch Med, Div Genet, Boston, MA 02115 USA
[3] Broad Inst, Med & Populat Genet Program, Cambridge, MA USA
[4] Merck Res Labs, Boston, MA USA
基金
美国国家卫生研究院;
关键词
CD4(+) memory T cells; genome-wide association studies; JAK-STAT signaling pathway; NF-B signaling pathway; regulatory T cells; rheumatoid arthritis; MAJOR HISTOCOMPATIBILITY COMPLEX; SINGLE-NUCLEOTIDE POLYMORPHISMS; GENETIC ASSOCIATION; MONOCLONAL-ANTIBODY; EUROPEAN ANCESTRY; COMMON VARIANTS; RARE VARIANTS; LOW-FREQUENCY; CD40; LIGAND; CONFER RISK;
D O I
10.1097/BOR.0000000000000012
中图分类号
R5 [内科学];
学科分类号
100201 [内科学];
摘要
Purpose of reviewA significant number of loci implicated in rheumatoid arthritis (RA) susceptibility have been highlighted by genome-wide association studies (GWAS). Here, we review the recent advances of GWAS in understanding the genetic architecture of RA, and place these findings in the context of RA pathogenesis.Recent findingsAlthough the interpretation of GWAS findings in the context of the disease biology remains challenging, interesting observations can be highlighted. Integration of GWAS results with cell-type specific gene expression or epigenetic marks have highlighted regulatory T cells and CD4(+) memory T cells as critical cell types in RA. In addition, many genes in RA loci are involved in the nuclear factor-kappaB signaling pathway or the Janus kinase (JAK)-signal transducers and activators of transcription (STAT) signaling pathway. The observation that these pathways are targeted by several approved drugs used to treat the symptoms of RA highlights the promises of human genetics to provide insights in the disease biology, and help identify new therapeutic targets.SummaryThese findings highlight the promises and need of future studies investigating causal genes and underlined mechanisms in GWAS loci to advance our understanding of RA.
引用
收藏
页码:85 / 92
页数:8
相关论文
共 99 条
[1]
Mutations in PCSK9 cause autosomal dominant hypercholesterolemia [J].
Abifadel, M ;
Varret, M ;
Rabès, JP ;
Allard, D ;
Ouguerram, K ;
Devillers, M ;
Cruaud, C ;
Benjannet, S ;
Wickham, L ;
Erlich, D ;
Derré, A ;
Villéger, L ;
Farnier, M ;
Beucler, I ;
Bruckert, E ;
Chambaz, J ;
Chanu, B ;
Lecerf, JM ;
Luc, G ;
Moulin, P ;
Weissenbach, J ;
Prat, A ;
Krempf, M ;
Junien, C ;
Seidah, NG ;
Boileau, C .
NATURE GENETICS, 2003, 34 (02) :154-156
[2]
Association of a functional variant downstream of TNFAIP3 with systemic lupus erythematosus [J].
Adrianto, Indra ;
Wen, Feng ;
Templeton, Amanda ;
Wiley, Graham ;
King, Jarrod B. ;
Lessard, Christopher J. ;
Bates, Jared S. ;
Hu, Yanqing ;
Kelly, Jennifer A. ;
Kaufman, Kenneth M. ;
Guthridge, Joel M. ;
Alarcon-Riquelme, Marta E. ;
Anaya, Juan-Manuel ;
Bae, Sang-Cheol ;
Bang, So-Young ;
Boackle, Susan A. ;
Brown, Elizabeth E. ;
Petri, Michelle A. ;
Gallant, Caroline ;
Ramsey-Goldman, Rosalind ;
Reveille, John D. ;
Vila, Luis M. ;
Criswell, Lindsey A. ;
Edberg, Jeffrey C. ;
Freedman, Barry I. ;
Gregersen, Peter K. ;
Gilkeson, Gary S. ;
Jacob, Chaim O. ;
James, Judith A. ;
Kamen, Diane L. ;
Kimberly, Robert P. ;
Martin, Javier ;
Merrill, Joan T. ;
Niewold, Timothy B. ;
Park, So-Yeon ;
Pons-Estel, Bernardo A. ;
Scofield, R. Hal ;
Stevens, Anne M. ;
Tsao, Betty P. ;
Vyse, Timothy J. ;
Langefeld, Carl D. ;
Harley, John B. ;
Moser, Kathy L. ;
Webb, Carol F. ;
Humphrey, Mary Beth ;
Montgomery, Courtney Gray ;
Gaffney, Patrick M. .
NATURE GENETICS, 2011, 43 (03) :253-U102
[3]
Cutting Edge: The PTPN22 Allelic Variant Associated with Autoimmunity Impairs B Cell Signaling [J].
Arechiga, Adrian F. ;
Habib, Tania ;
He, Yantao ;
Zhang, Xian ;
Zhang, Zhong-Yin ;
Funk, Andrew ;
Buckner, Jane H. .
JOURNAL OF IMMUNOLOGY, 2009, 182 (06) :3343-3347
[4]
Identification of AF4/FMR2 family, member 3 (AFF3) as a novel rheumatoid arthritis susceptibility locus and confirmation of two further pan-autoimmune susceptibility genes [J].
Barton, Anne ;
Eyre, Steve ;
Ke, Xiayi ;
Hinks, Anne ;
Bowes, John ;
Flynn, Edward ;
Martin, Paul ;
Wilson, Anthony G. ;
Morgan, Ann W. ;
Emery, Paul ;
Steer, Sophia ;
Hocking, Lynne J. ;
Reid, David M. ;
Harrison, Pille ;
Wordsworth, Paul ;
Thomson, Wendy ;
Worthington, Jane .
HUMAN MOLECULAR GENETICS, 2009, 18 (13) :2518-2522
[5]
Integrated Genetic and Epigenetic Analysis Identifies Haplotype-Specific Methylation in the FTO Type 2 Diabetes and Obesity Susceptibility Locus [J].
Bell, Christopher G. ;
Finer, Sarah ;
Lindgren, Cecilia M. ;
Wilson, Gareth A. ;
Rakyan, Vardhman K. ;
Teschendorff, Andrew E. ;
Akan, Pelin ;
Stupka, Elia ;
Down, Thomas A. ;
Prokopenko, Inga ;
Morison, Ian M. ;
Mill, Jonathan ;
Pidsley, Ruth ;
Deloukas, Panos ;
Frayling, Timothy M. ;
Hattersley, Andrew T. ;
McCarthy, Mark I. ;
Beck, Stephan ;
Hitman, Graham A. .
PLOS ONE, 2010, 5 (11)
[6]
Increased expression of CD40 ligand (CD154) on CD4+T cells as a marker of disease activity in rheumatoid arthritis [J].
Berner, B ;
Wolf, G ;
Hummel, KM ;
Müller, GA ;
Reuss-Borst, MA .
ANNALS OF THE RHEUMATIC DISEASES, 2000, 59 (03) :190-195
[7]
Platelets Amplify Inflammation in Arthritis via Collagen-Dependent Microparticle Production [J].
Boilard, Eric ;
Nigrovic, Peter A. ;
Larabee, Katherine ;
Watts, Gerald F. M. ;
Coblyn, Jonathan S. ;
Weinblatt, Michael E. ;
Massarotti, Elena M. ;
Remold-O'Donnell, Eileen ;
Farndale, Richard W. ;
Ware, Jerry ;
Lee, David M. .
SCIENCE, 2010, 327 (5965) :580-583
[8]
Rare MTNR1B variants impairing melatonin receptor 1B function contribute to type 2 diabetes [J].
Bonnefond, Amelie ;
Clement, Nathalie ;
Fawcett, Katherine ;
Yengo, Loic ;
Vaillant, Emmanuel ;
Guillaume, Jean-Luc ;
Dechaume, Aurelie ;
Payne, Felicity ;
Roussel, Ronan ;
Czernichow, Sebastien ;
Hercberg, Serge ;
Hadjadj, Samy ;
Balkau, Beverley ;
Marre, Michel ;
Lantieri, Olivier ;
Langenberg, Claudia ;
Bouatia-Naji, Nabila ;
Charpentier, Guillaume ;
Vaxillaire, Martine ;
Rocheleau, Ghislain ;
Wareham, Nicholas J. ;
Sladek, Robert ;
McCarthy, Mark I. ;
Dina, Christian ;
Barroso, Ines ;
Jockers, Ralf ;
Froguel, Philippe .
NATURE GENETICS, 2012, 44 (03) :297-U98
[9]
ORMDL3 modulates store-operated calcium entry and lymphocyte activation [J].
Carreras-Sureda, Amado ;
Cantero-Recasens, Gerard ;
Rubio-Moscardo, Fanny ;
Kiefer, Kerstin ;
Peinelt, Christine ;
Niemeyer, Barbara A. ;
Valverde, Miguel A. ;
Vicente, Ruben .
HUMAN MOLECULAR GENETICS, 2013, 22 (03) :519-530
[10]
Sequence variations in PCSK9, low LDL, and protection against coronary heart disease [J].
Cohen, JC ;
Boerwinkle, E ;
Mosley, TH ;
Hobbs, HH .
NEW ENGLAND JOURNAL OF MEDICINE, 2006, 354 (12) :1264-1272