Gene synthesis demystified

被引:106
作者
Czar, Michael J. [1 ]
Anderson, J. Christopher [2 ]
Bader, Joel S. [3 ,4 ]
Peccoud, Jean [1 ]
机构
[1] Virginia Polytech Inst & State Univ, Virginia Bioinformat Inst, Blacksburg, VA 24061 USA
[2] Univ Calif Berkeley, Dept Bioengn, Inst Quantitat Biol Res, Phys Biosci Div,Lawrence Berkeley Natl Lab, Berkeley, CA 94720 USA
[3] Johns Hopkins Univ, Dept Biomed Engn, Baltimore, MD 21218 USA
[4] Johns Hopkins Univ, High Throughput Biol Ctr, Baltimore, MD 21218 USA
关键词
LIGATION-INDEPENDENT CLONING; ENZYMATIC AMPLIFICATION; CHEMICAL-SYNTHESIS; ESCHERICHIA-COLI; DNA-SEQUENCES; IN-VITRO; DESIGN; RECOMBINATION; EXPRESSION; BIOLOGY;
D O I
10.1016/j.tibtech.2008.10.007
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
DNA fabrication of genetic cassettes at base-level precision is transforming genetic engineering from a laborious art to an information-driven discipline. Although substantial advances have been made in the development of DNA fabrication, the methods employed vary widely based on the length of the DNA. All of these methods are available commercially, but can also be performed at the molecular biology bench using typical reagents and procedures. Because the technology is not mature and is still evolving rapidly, it is helpful to gain some understanding of the different steps in this process and the associated technical challenges to successfully take advantage of DNA fabrication in a research project.
引用
收藏
页码:63 / 72
页数:10
相关论文
共 59 条
[1]   TOTAL SYNTHESIS OF GENE FOR AN ALANINE TRANSFER RIBONUCLEIC ACID FROM YEAST [J].
AGARWAL, KL ;
BUCHI, H ;
CARUTHERS, MH ;
GUPTA, N ;
KHORANA, HG ;
KLEPPE, K ;
KUMAR, A ;
OHTSUKA, E ;
RAJBHANDARY, UL ;
VANDESAN.JH ;
SGARAMELLA, V ;
WEBER, H ;
YAMADA, T .
NATURE, 1970, 227 (5253) :27-+
[2]  
Angrand P O, 1999, Nucleic Acids Res, V27, pe16, DOI 10.1093/nar/27.17.e16
[3]  
[Anonymous], 2004, SCIENCE, V303, P159, DOI 10.1126/science.303.5655.158
[4]   LIGATION-INDEPENDENT CLONING OF PCR PRODUCTS (LIC-PCR) [J].
ASLANIDIS, C ;
DEJONG, PJ .
NUCLEIC ACIDS RESEARCH, 1990, 18 (20) :6069-6074
[5]  
ASLANIDIS C, 1994, PCR METH APPL, V4, P172
[6]   Synthetic biology: Starting from scratch [J].
Ball, P .
NATURE, 2004, 431 (7009) :624-626
[7]   Gene synthesis by circular assembly amplification [J].
Bang, Duhee ;
Church, George M. .
NATURE METHODS, 2008, 5 (01) :37-39
[8]   Validation of a novel, fully integrated and flexible microarray benchtop facility for gene expression profiling -: art. no. e151 [J].
Baum, M ;
Bielau, S ;
Rittner, N ;
Schmid, K ;
Eggelbusch, K ;
Dahms, M ;
Schlauersbach, A ;
Tahedl, H ;
Beier, M ;
Güimil, R ;
Scheffler, M ;
Hermann, C ;
Funk, JM ;
Wixmerten, A ;
Rebscher, H ;
Hönig, M ;
Andreae, C ;
Büchner, D ;
Moschel, E ;
Glathe, A ;
Jäger, E ;
Thom, M ;
Greil, A ;
Bestvater, F ;
Obermeier, F ;
Burgmaier, J ;
Thome, K ;
Weichert, S ;
Hein, S ;
Binnewies, T ;
Foitzik, V ;
Müller, M ;
Stähler, CF ;
Stähler, PF .
NUCLEIC ACIDS RESEARCH, 2003, 31 (23) :e151
[9]   Correcting errors in synthetic DNA through consensus shuffling [J].
Binkowski, BF ;
Richmond, KE ;
Kaysen, J ;
Sussman, MR ;
Belshaw, PJ .
NUCLEIC ACIDS RESEARCH, 2005, 33 (06) :1-8
[10]   DNA synthesis and biological security [J].
Bugl, Hans ;
Danner, John P. ;
Molinari, Robert J. ;
Mulligan, John T. ;
Park, Han-Oh ;
Reichert, Bas ;
Roth, David A. ;
Wagner, Ralf ;
Budowle, Bruce ;
Scripp, Robert M. ;
Smith, Jenifer A. L. ;
Steele, Scott J. ;
Church, George ;
Endy, Drew .
NATURE BIOTECHNOLOGY, 2007, 25 (06) :627-629