The influence of axial ligands on the reduction potential of blue copper proteins

被引:81
作者
Olsson, MHM [1 ]
Ryde, U [1 ]
机构
[1] Lund Univ, Ctr Chem, Dept Theoret Chem, S-22100 Lund, Sweden
来源
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY | 1999年 / 4卷 / 05期
关键词
blue copper protein; entatic state theory; induced rack theory; quantum chemical calculations; reduction potential;
D O I
10.1007/s007750050389
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The reduction potentials of blue copper sites vary between 180 and about 1000 mV. It has been suggested that the reason for this variation is that the proteins constrain the distance between the copper ion and its axial ligands to different values. We have tested this suggestion by performing density functional B3LYP calculations on realistic models of the blue copper proteins, including solvent effects by the polarizable continuum method. Constraining the Cu-S-Met bond length to values between 245 and 310 pm (the range encountered in crystal structures) change the reduction potential by less than 70 mV. Similarly, we have studied five typical blue copper proteins spanning the whole range of reduction potentials: stellacyanin, plastocyanin, azurin, rusticyanin, and ceruloplasmin. These studies included the methionine (or glutamine) ligand as well as the back-bone carbonyl oxygen group that is a Ligand in azurin and is found at larger distances in the other proteins. The active-site models of these proteins show a variation in the reduction potential of about 140 mV, i.e., only a minor part of the range observed experimentally (800 mV). Consequently, we can conclude that the axial ligands have a small influence on the reduction potentials of the blue copper proteins. Instead, the large variation in the reduction potentials seems to arise mainly from variations in the solvent accessibility of the copper site and in the orientation of protein dipoles around the copper site.
引用
收藏
页码:654 / 663
页数:10
相关论文
共 48 条
[1]   ELECTRONIC-STRUCTURE CALCULATIONS ON WORKSTATION COMPUTERS - THE PROGRAM SYSTEM TURBOMOLE [J].
AHLRICHS, R ;
BAR, M ;
HASER, M ;
HORN, H ;
KOLMEL, C .
CHEMICAL PHYSICS LETTERS, 1989, 162 (03) :165-169
[3]   Quantum calculation of molecular energies and energy gradients in solution by a conductor solvent model [J].
Barone, V ;
Cossi, M .
JOURNAL OF PHYSICAL CHEMISTRY A, 1998, 102 (11) :1995-2001
[4]   A new definition of cavities for the computation of solvation free energies by the polarizable continuum model [J].
Barone, V ;
Cossi, M ;
Tomasi, J .
JOURNAL OF CHEMICAL PHYSICS, 1997, 107 (08) :3210-3221
[5]   DEPLETION AND REPLACEMENT OF PROTEIN METAL LIGANDS [J].
BARRICK, D .
CURRENT OPINION IN BIOTECHNOLOGY, 1995, 6 (04) :411-418
[6]   NMR solution structure of Cu(I) rusticyanin from Thiobacillus ferrooxidans: Structural basis for the extreme acid stability and redox potential [J].
Botuyan, MV ;
ToyPalmer, A ;
Chung, J ;
Blake, RC ;
Beroza, P ;
Case, DA ;
Dyson, HJ .
JOURNAL OF MOLECULAR BIOLOGY, 1996, 263 (05) :752-767
[7]   X-RAY CRYSTAL-STRUCTURE ANALYSIS OF PLASTOCYANIN AT 2.7A RESOLUTION [J].
COLMAN, PM ;
FREEMAN, HC ;
GUSS, JM ;
MURATA, M ;
NORRIS, VA ;
RAMSHAW, JAM ;
VENKATAPPA, MP .
NATURE, 1978, 272 (5651) :319-324
[8]   Theoretical study of the structural and spectroscopic properties of stellacyanin [J].
De Kerpel, JOA ;
Pierloot, K ;
Ryde, U ;
Roos, BO .
JOURNAL OF PHYSICAL CHEMISTRY B, 1998, 102 (23) :4638-4647
[9]  
De Kerpel JOA, 1999, PROTEINS, V36, P157, DOI 10.1002/(SICI)1097-0134(19990801)36:2<157::AID-PROT3>3.0.CO
[10]  
2-Y