Multiple state transition path sampling

被引:49
作者
Rogal, Jutta [1 ]
Bolhuis, Peter G. [1 ]
机构
[1] Univ Amsterdam, Van Hoff Inst Mol Sci, NL-1018 WV Amsterdam, Netherlands
关键词
biochemistry; molecular biophysics; proteins; reaction kinetics theory; reaction rate constants; stochastic processes;
D O I
10.1063/1.3029696
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We developed a multiple state transition path sampling (TPS) approach in which it is possible to simultaneously sample pathways connecting a number of different stable states. Based on the original formulation of the TPS we have extended the path ensemble to include trajectories connecting not only two distinct stable states but any two states defined within a system. The multiple state TPS approach is useful in complex systems exhibiting a number of intermediate stable states that are interconnected in phase space. Combining this approach with transition interface sampling we can also directly obtain an expression for the rate constants of all possible transitions within the system.
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页数:9
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