DiscoverySpace: an interactive data analysis application

被引：39

作者：

Robertson, Neil ^{[1
]}

Oveisi-Fordorei, Mehrdad ^{[1
]}

Zuyderduyn, Scott D. ^{[1
]}

Varhol, Richard J. ^{[1
]}

Fjell, Christopher ^{[1
]}

Marra, Marco ^{[1
]}

Jones, Steven ^{[1
]}

Siddiqui, Asim ^{[1
]}

机构：

[1] British Columbia Canc Agcy, Canadas Michael Smith Genome Sci Ctr, British Columbia Canc Res Ctr, Vancouver, BC V5Z 4E6, Canada

来源：

GENOME BIOLOGY | 2007年 / 8卷 / 01期

关键词：

GENE-EXPRESSION; SERIAL ANALYSIS; BIOINFORMATICS; ONTOLOGY; SEQUENCE; RESOURCE; ENSEMBL; ANATOMY; DESIGN; ATLAS;

D O I：

10.1186/gb-2007-8-1-r6

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

DiscoverySpace is a graphical application for bioinformatics data analysis. Users can seamlessly traverse references between biological databases and draw together annotations in an intuitive tabular interface. Datasets can be compared using a suite of novel tools to aid in the identification of significant patterns. DiscoverySpace is of broad utility and its particular strength is in the analysis of serial analysis of gene expression (SAGE) data. The application is freely available online.

引用

页数：13

共 52 条

[1] Correction of sequence-based artifacts in serial analysis of gene expression [J].

Akmaev, VR ;

Wang, CJ .

BIOINFORMATICS, 2004, 20 (08) :1254-1263

[2] FatiGO:: a web tool for finding significant associations of Gene Ontology terms with groups of genes [J].

Al-Shahrour, F ;

Díaz-Uriarte, R ;

Dopazo, J .

BIOINFORMATICS, 2004, 20 (04) :578-580

[3]

ANDREEVA A, 2004, NUCLEIC ACIDS RES, pE226

[4]

Ashburner M, 2001, GENOME RES, V11, P1425, DOI 10.1101/gr.180801

[5] The significance of digital gene expression profiles [J].

Audic, S ;

Claverie, JM .

GENOME RESEARCH, 1997, 7 (10) :986-995

[6] The universal protein resource (UniProt) [J].

Bairoch, Amos ;

Bougueleret, Lydie ;

Altairac, Severine ;

Amendolia, Valeria ;

Auchincloss, Andrea ;

Puy, Ghislaine Argoud ;

Axelsen, Kristian ;

Baratin, Delphine ;

Blatter, Marie-Claude ;

Boeckmann, Brigitte ;

Bollondi, Laurent ;

Boutet, Emmanuel ;

Quintaje, Silvia Braconi ;

Breuza, Lionel ;

Bridge, Alan ;

deCastro, Edouard ;

Coral, Danielle ;

Coudert, Elisabeth ;

Cusin, Isabelle ;

Dobrokhotov, Pavel ;

Dornevil, Dolnide ;

Duvaud, Severine ;

Estreicher, Anne ;

Famiglietti, Livia ;

Feuermann, Marc ;

Gehant, Sebastian ;

Farriol-Mathis, Nathalie ;

Ferro, Serenella ;

Gasteiger, Elisabeth ;

Gateau, Alain ;

Gerritsen, Vivienne ;

Gos, Arnaud ;

Gruaz-Gumowski, Nadine ;

Hinz, Ursula ;

Hulo, Chantal ;

Hulo, Nicolas ;

Ioannidis, Vassilios ;

Ivanyi, Ivan ;

James, Janet ;

Jain, Eric ;

Jimenez, Silvia ;

Jungo, Florence ;

Junker, Vivien ;

Keller, Guillaume ;

Lachaize, Corinne ;

Lane-Guermonprez, Lydie ;

Langendijk-Genevaux, Petra ;

Lara, Vicente ;

Lemercier, Philippe ;

Le Saux, Virginie .

NUCLEIC ACIDS RESEARCH, 2007, 35 :D193-D197

[7]

Bateman A, 2004, NUCLEIC ACIDS RES, V32, pD138, DOI [10.1093/nar/gkr1065, 10.1093/nar/gkh121, 10.1093/nar/gkp985]

[8] Statistical modeling of sequencing errors in SAGE libraries [J].

Beissbarth, Tim ;

Hyde, Lavinia ;

Smyth, Gordon K. ;

Job, Chris ;

Boon, Wee-Ming ;

Tan, Seong-Seng ;

Scott, Hamish S. ;

Speed, Terence P. .

BIOINFORMATICS, 2004, 20 :31-39

[9]

Benson Dennis A, 2005, Nucleic Acids Res, V33, pD34

[10]

Birney E, 2001, AM J HUM GENET, V69, P219

← 1 2 3 4 5 6 →