The Healthy Twin Study, Korea Updates: Resources for Omics and Genome Epidemiology Studies

被引:35
作者
Gombojav, Bayasgalan [1 ]
Song, Yun-Mi [2 ,3 ]
Lee, Kayoung [4 ]
Yang, Sarah [5 ]
Kho, Minjung [5 ]
Hwang, Yong-Chul [5 ]
Ko, Gwangpyo [6 ,7 ]
Sung, Joohon [1 ,5 ]
机构
[1] Seoul Natl Univ, Sch Publ Hlth, Inst Environm & Hlth, Seoul 151742, South Korea
[2] Sungkyunkwan Univ, Samsung Med Ctr, Dept Family Med, Sch Med, Seoul, South Korea
[3] Sungkyunkwan Univ, Clin Res Ctr, Sch Med, Samsung Biomed Res Inst, Seoul, South Korea
[4] Inje Univ, Coll Med, Busan Paik Hosp, Dept Family Med, Gimhae, South Korea
[5] Seoul Natl Univ, Sch Publ Hlth, Dept Epidemiol, Complex Dis & Genome Epidemiol Branch, Seoul 151742, South Korea
[6] Seoul Natl Univ, Sch Publ Hlth, Dept Environm Hlth, Environm Microbiol Branch, Seoul 151742, South Korea
[7] MIT & Harvard, Broad Inst, Genome Sequence & Anal Program, Cambridge, MA USA
基金
新加坡国家研究基金会;
关键词
twin research; twin registry; cohort study; genomics; QUESTIONNAIRE; ZYGOSITY; VALIDITY;
D O I
10.1017/thg.2012.130
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The Healthy Twin Study, Korea (HT) is an ongoing multi-center cohort study that was initiated in 2005, based on a nation-wide twin and family database. Since its inception, the HT has recruited 815 pairs of adult twins and a total of 3,690 individual twins and their families as of July 2012. Here we summarize updates since the previous report in 2006. Besides the increase in size, the HT has been enriched in several aspects: a biobank was constructed for ongoing and future omics studies; and genome-wide single nucleotide polymorphism markers (Affymetrix GeneChip version 6.0, 1 M probes) have been analyzed for 2,200 individuals, which enabled gene identification studies for measured phenotypes. In addition, longitudinal study protocols were established through the HT and a second wave survey was finished in 2010 with > 70% follow-up rate. The parallel genome research projects were recently launched, which would expedite multi-omics studies maximizing the twin potentials such as metagenomics and epigenetics studies, and endow us with resources for recruiting more participants. We submit this report to share updates and research opportunities from the HT.
引用
收藏
页码:241 / 245
页数:5
相关论文
共 9 条
[1]   Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls [J].
Burton, Paul R. ;
Clayton, David G. ;
Cardon, Lon R. ;
Craddock, Nick ;
Deloukas, Panos ;
Duncanson, Audrey ;
Kwiatkowski, Dominic P. ;
McCarthy, Mark I. ;
Ouwehand, Willem H. ;
Samani, Nilesh J. ;
Todd, John A. ;
Donnelly, Peter ;
Barrett, Jeffrey C. ;
Davison, Dan ;
Easton, Doug ;
Evans, David ;
Leung, Hin-Tak ;
Marchini, Jonathan L. ;
Morris, Andrew P. ;
Spencer, Chris C. A. ;
Tobin, Martin D. ;
Attwood, Antony P. ;
Boorman, James P. ;
Cant, Barbara ;
Everson, Ursula ;
Hussey, Judith M. ;
Jolley, Jennifer D. ;
Knight, Alexandra S. ;
Koch, Kerstin ;
Meech, Elizabeth ;
Nutland, Sarah ;
Prowse, Christopher V. ;
Stevens, Helen E. ;
Taylor, Niall C. ;
Walters, Graham R. ;
Walker, Neil M. ;
Watkins, Nicholas A. ;
Winzer, Thilo ;
Jones, Richard W. ;
McArdle, Wendy L. ;
Ring, Susan M. ;
Strachan, David P. ;
Pembrey, Marcus ;
Breen, Gerome ;
St Clair, David ;
Caesar, Sian ;
Gordon-Smith, Katherine ;
Jones, Lisa ;
Fraser, Christine ;
Green, Elain K. .
NATURE, 2007, 447 (7145) :661-678
[2]   QIIME allows analysis of high-throughput community sequencing data [J].
Caporaso, J. Gregory ;
Kuczynski, Justin ;
Stombaugh, Jesse ;
Bittinger, Kyle ;
Bushman, Frederic D. ;
Costello, Elizabeth K. ;
Fierer, Noah ;
Pena, Antonio Gonzalez ;
Goodrich, Julia K. ;
Gordon, Jeffrey I. ;
Huttley, Gavin A. ;
Kelley, Scott T. ;
Knights, Dan ;
Koenig, Jeremy E. ;
Ley, Ruth E. ;
Lozupone, Catherine A. ;
McDonald, Daniel ;
Muegge, Brian D. ;
Pirrung, Meg ;
Reeder, Jens ;
Sevinsky, Joel R. ;
Tumbaugh, Peter J. ;
Walters, William A. ;
Widmann, Jeremy ;
Yatsunenko, Tanya ;
Zaneveld, Jesse ;
Knight, Rob .
NATURE METHODS, 2010, 7 (05) :335-336
[3]  
Christiansen L, 2003, TWIN RES, V6, P275, DOI 10.1375/136905203322296610
[4]   The Human Microbiome Project: A Community Resource for the Healthy Human Microbiome [J].
Gevers, Dirk ;
Knight, Rob ;
Petrosino, Joseph F. ;
Huang, Katherine ;
McGuire, Amy L. ;
Birren, Bruce W. ;
Nelson, Karen E. ;
White, Owen ;
Methe, Barbara A. ;
Huttenhower, Curtis .
PLOS BIOLOGY, 2012, 10 (08)
[5]   Genotype imputation for genome-wide association studies [J].
Marchini, Jonathan ;
Howie, Bryan .
NATURE REVIEWS GENETICS, 2010, 11 (07) :499-511
[6]   Validity of the Zygosity Questionnaire and Characteristics of Zygosity-Misdiagnosed Twin Pairs in the Healthy Twin Study of Korea [J].
Song, Yun-Mi ;
Lee, Donghun ;
Lee, Mi Kyoung ;
Lee, Kayoung ;
Lee, Hee Jung ;
Hong, Eun Jung ;
Han, Bokghee ;
Sung, Joohon .
TWIN RESEARCH AND HUMAN GENETICS, 2010, 13 (03) :223-230
[7]   Do we need more twin studies? The Healthy Twin Study, Korea [J].
Sung, J ;
Cho, SI ;
Song, YM ;
Lee, K ;
Choi, EY ;
Ha, M ;
Kim, J ;
Kim, H ;
Kim, Y ;
Shin, EK ;
Kim, YH ;
Yoo, KY ;
Park, C ;
Kimm, K .
INTERNATIONAL JOURNAL OF EPIDEMIOLOGY, 2006, 35 (02) :488-490
[8]  
Sung JH, 2002, TWIN RES, V5, P394
[9]   Healthy Twin: A twin-family study of Korea - Protocols and current status [J].
Sung, Joohon ;
Cho, Sung-Il ;
Lee, Kayoung ;
Ha, Mina ;
Choi, Eun-Young ;
Choi, Ji-Sook ;
Kim, Ho ;
Kim, Jihae ;
Hong, Kyoung Sue ;
Kim, Yeonju ;
Yoo, Keun-Young ;
Park, Chan ;
Song, Yun-Mi .
TWIN RESEARCH AND HUMAN GENETICS, 2006, 9 (06) :844-848