Hydrophobic force field as a molecular alternative to surface-area models

被引:67
作者
Hummer, G [1 ]
机构
[1] Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA
关键词
D O I
10.1021/ja984414s
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
An effective force field for hydrophobic interactions is developed based on a modified potential of-mean-force (PMF) expansion of the effective many-body interactions between nonpolar molecules in water. For the simplest nonpolar solutes in water, hard particles, the modified PMF expansion is exact in both limiting cases of infinite separation and perfect overlap. The hydrophobic interactions are parametrized by using the information-theory model of hydrophobic hydration. The interactions between nonpolar solutes are short-ranged and can be evaluated efficiently on a computer. The force field is compared with simulation data;for alkane conformational equilibria in water as well as a model for the formation of a hydrophobic core of a protein. The modified PMF expansion can be extended to solutes with attractive interactions, The observed accuracy, computational efficiency, and atomic detail of the model suggest that this simple hydrophobic force field can lead to a molecular alternative for phenomenological surface-area models with applications in ligand-binding and protein-folding studies.
引用
收藏
页码:6299 / 6305
页数:7
相关论文
共 92 条
[1]   Solubility of nonpolar solutes in water: Computer simulations using the CF1 central force model [J].
Arthur, JW ;
Haymet, ADJ .
JOURNAL OF CHEMICAL PHYSICS, 1998, 109 (18) :7991-8002
[2]   Entropy of hydrophobic hydration: Extension to hydrophobic chains [J].
Ashbaugh, HS ;
Paulaitis, ME .
JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (05) :1900-1913
[3]   Hydration and conformational equilibria of simple hydrophobic and amphiphilic solutes [J].
Ashbaugh, HS ;
Kaler, EW ;
Paulaitis, ME .
BIOPHYSICAL JOURNAL, 1998, 75 (02) :755-768
[4]   A molecular/continuum thermodynamic model of hydration [J].
Ashbaugh, HS ;
Paulaitis, ME .
JOURNAL OF PHYSICAL CHEMISTRY B, 1998, 102 (26) :5029-5032
[5]  
ASHBAUGH HS, 1999, IN PRESS BIOPHYS J
[6]   FINITE REPRESENTATION OF AN INFINITE BULK SYSTEM - SOLVENT BOUNDARY POTENTIAL FOR COMPUTER-SIMULATIONS [J].
BEGLOV, D ;
ROUX, B .
JOURNAL OF CHEMICAL PHYSICS, 1994, 100 (12) :9050-9063
[7]  
Ben-Naim A., 1980, HYDROPHOBIC INTERACT
[8]  
Berendsen H., 1981, INTERMOLECULAR FORCE, V331, P331, DOI [DOI 10.1007/978-94-015-7658-1_21, 10.1007/978-94-015-7658, DOI 10.1007/978-94-015-7658]
[10]   Molecular thermodynamics of hydrophobic hydration [J].
Besseling, NAM ;
Lyklema, J .
JOURNAL OF PHYSICAL CHEMISTRY B, 1997, 101 (38) :7604-7611