AAindex: amino acid index database, progress report 2008

被引：861

作者：

Kawashima, Shuichi ^{[1
]}

Pokarowski, Piotr ^{[2
]}

Pokarowska, Maria ^{[3
]}

Kolinski, Andrzej ^{[4
]}

Katayama, Toshiaki ^{[1
]}

Kanehisa, Minoru ^{[1
,5
]}

机构：

[1] Univ Tokyo, Inst Med Sci, Ctr Human Genome, Lab Genome Database,Minato Ku, Tokyo 1088639, Japan

[2] Warsaw Univ, Fac Math Informat & Mech, Inst Informat, PL-02097 Warsaw, Poland

[3] Warsaw Univ Technol, Fac Geodesy & Cartog, PL-00661 Warsaw, Poland

[4] Warsaw Univ, Fac Chem, Lab Theory Biopolymers, PL-02093 Warsaw, Poland

[5] Kyoto Univ, Inst Chem Res, Bioinformat Ctr, Kyoto 6110011, Japan

来源：

NUCLEIC ACIDS RESEARCH | 2008年 / 36卷

基金：

日本科学技术振兴机构;

关键词：

D O I：

10.1093/nar/gkm998

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

AAindex is a database of numerical indices representing various physicochemical and biochemical properties of amino acids and pairs of amino acids. We have added a collection of protein contact potentials to the AAindex as a new section. Accordingly AAindex consists of three sections now: AAindex1 for the amino acid index of 20 numerical values, AAindex2 for the amino acid substitution matrix and AAindex3 for the statistical protein contact potentials. All data are derived from published literature. The database can be accessed through the DBGET/LinkDB system at GenomeNet http://www.genome.jp/dbget-bin/www_bfind?aaindex) or downloaded by anonymous FTP (ftp://ftp.genome.jp/pub/db/community/aaindex/).

引用

页码：D202 / D205

页数：4

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