Targeting the Conformational Transitions of MDM2 and MDMX: Insights into Dissimilarities and Similarities of p53 Recognition

被引:27
作者
Macchiarulo, Antonio [1 ]
Giacche, Nicola [1 ]
Carotti, Andrea [1 ]
Baroni, Massimo [2 ]
Cruciani, Gabriele [2 ,3 ]
Pellicciari, Roberto [1 ]
机构
[1] Univ Perugia, Dipartimento Chim & Tecnol Farmaco, I-06123 Perugia, Italy
[2] Mol Discovery Ltd, Pinner HA5 5NE, Middx, England
[3] Univ Perugia, Dept Chem, Lab Chemometr & Cheminformat, I-06123 Perugia, Italy
关键词
D O I
10.1021/ci800146m
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
MDM2 and MDMX are oncogenic homologue proteins that regulate the activity and stability of p53. a tumor Suppressor protein involved in more than 50% Of human cancers. While the large body of experiments so far accumulated has validated MDM2 as a therapeutically important target for the development of anticancer drugs. it is only recently that MDMX has also become ail attractive target for the treatment of tumor cells expressing wild type p53. The availability of structural information of the N-terminal domain of MDM2 ill complex with p53-derived peptides and inhibitors, and the very recent disclosure of the crystal Structure of the N-terminal domain of MDMX bound to a p53 peptide, offer all unprecedented opportunity to provide insight into the molecular basis of p53 recognition and the identification of discriminating features affecting the binding of the tumor suppressor protein at MDM2 and MDMX. By using coarse graining simulations. in this Study we report the exploration of the conformational transitions featured in the pathway leading from the apo-MDM2 and apo-MDMX states to the p53-bound MDM2 and p53-bound MDMX states., respectively. The results have enabled LIS to identify a pool of diverse conformational states of the oncogenic proteins that affect the binding of p53 and the presence of conserved anti non-conserved interactions along the conformational transition pathway that may be exploited in the design of selective and dual modulators of MDM2 and MDMX activity.
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页码:1999 / 2009
页数:11
相关论文
共 47 条
[1]   Protein-protein interactions as a target for drugs in proteomics [J].
Archakov, AI ;
Govorun, VM ;
Dubanov, AV ;
Ivanov, YD ;
Veselovsky, AV ;
Lewi, P ;
Janssen, P .
PROTEOMICS, 2003, 3 (04) :380-391
[2]   A common reference framework for analyzing/comparing proteins and ligands. Fingerprints for ligands and proteins (FLAP): Theory and application [J].
Baroni, Massimo ;
Cruciani, Gabriele ;
Sciabola, Simone ;
Perruccio, Francesca ;
Mason, Jonathan S. .
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2007, 47 (02) :279-294
[3]   Small molecule inhibitors of the MDM2-p53 interaction discovered by ensemble-based receptor models [J].
Bowman, Anna L. ;
Nikolovska-Coleska, Zaneta ;
Zhong, Haizhen ;
Wang, Shaomeng ;
Carlson, Heather A. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (42) :12809-12814
[4]   Inhibiting the p53-MDM2 interaction:: An important target for cancer therapy [J].
Chène, P .
NATURE REVIEWS CANCER, 2003, 3 (02) :102-109
[5]   MolProbity: all-atom contacts and structure validation for proteins and nucleic acids [J].
Davis, Ian W. ;
Leaver-Fay, Andrew ;
Chen, Vincent B. ;
Block, Jeremy N. ;
Kapral, Gary J. ;
Wang, Xueyi ;
Murray, Laura W. ;
Arendall, W. Bryan, III ;
Snoeyink, Jack ;
Richardson, Jane S. ;
Richardson, David C. .
NUCLEIC ACIDS RESEARCH, 2007, 35 :W375-W383
[6]   Hdmx protein stability is regulated by the ubiquitin ligase activity of Mdm2 [J].
de Graaf, P ;
Little, NA ;
Ramos, YFM ;
Meulmeester, E ;
Letteboer, SJF ;
Jochemsen, AG .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (40) :38315-38324
[7]  
De Leeuw J., 1977, RECENT DEV STAT, P133
[8]  
Finch RA, 2002, CANCER RES, V62, P3221
[9]   Mdm4 and Mdm2 cooperate to inhibit p53 activity in proliferating and quiescent cells in vivo [J].
Francoz, S ;
Froment, P ;
Bogaerts, S ;
De Clercq, S ;
Maetens, M ;
Doumont, G ;
Bellefroid, E ;
Marine, JC .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (09) :3232-3237
[10]   A natural coarse graining for simulating large biomolecular motion [J].
Gohlke, Holger ;
Thorpey, M. F. .
BIOPHYSICAL JOURNAL, 2006, 91 (06) :2115-2120