Role of interfacial water in the molecular dynamics-simulated dynamical transition of plastocyanin

被引:42
作者
Arcangeli, C
Bizzarri, AR
Cannistraro, S [1 ]
机构
[1] Univ Perugia, Dipartimento Fis, Unita INFM, I-06100 Perugia, Italy
[2] Univ Tuscia, Dipartimento Sci Ambientali, I-01100 Viterbo, Italy
关键词
D O I
10.1016/S0009-2614(98)00557-0
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Molecular dynamics simulations of dry and partially hydrated plastocyanin have been performed at 13 temperatures, in the 20-350 K range, for 600 ps to investigate the role of hydration water on the thermal activation of protein dynamics. The analysis of results points out that a sharp dynamical transition occurs in the hydrated protein at about 220 K; such a transition appearing to be smeared out in the dry protein. The dynamical transition, which is much more marked for the solvent-exposed side chains than for the C-alpha atoms, is strongly coupled to the hydrogen bond network restructuring dynamics involving the interfacial water. (C) 1998. Published by Elsevier Science B.V. All rights reserved.
引用
收藏
页码:7 / 14
页数:8
相关论文
共 35 条
[1]   DYNAMICS OF HYDROGEN-ATOMS IN SUPEROXIDE-DISMUTASE BY QUASI-ELASTIC NEUTRON-SCATTERING [J].
ANDREANI, C ;
FILABOZZI, A ;
MENZINGER, F ;
DESIDERI, A ;
DERIU, A ;
DICOLA, D .
BIOPHYSICAL JOURNAL, 1995, 68 (06) :2519-2523
[2]   PROTEIN STATES AND PROTEIN QUAKES [J].
ANSARI, A ;
BERENDZEN, J ;
BOWNE, SF ;
FRAUENFELDER, H ;
IBEN, IET ;
SAUKE, TB ;
SHYAMSUNDER, E ;
YOUNG, RD .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1985, 82 (15) :5000-5004
[3]   THE MISSING TERM IN EFFECTIVE PAIR POTENTIALS [J].
BERENDSEN, HJC ;
GRIGERA, JR ;
STRAATSMA, TP .
JOURNAL OF PHYSICAL CHEMISTRY, 1987, 91 (24) :6269-6271
[4]   Origin of the anomalous diffusion observed by MD simulation at the protein-water interface [J].
Bizzarri, AR ;
Rocchi, C ;
Cannistraro, S .
CHEMICAL PHYSICS LETTERS, 1996, 263 (3-4) :559-566
[5]   Molecular dynamics simulation evidence of anomalous diffusion of protein hydration water [J].
Bizzarri, AR ;
Cannistraro, S .
PHYSICAL REVIEW E, 1996, 53 (04) :R3040-R3043
[6]   DISTRIBUTION OF CONFORMATIONAL STATES AS COMMON SOURCE OF G-STRAIN AND A-STRAIN IN THE ESR-SPECTRA OF PROTEINS AND GLASSES [J].
CANNISTRARO, S .
JOURNAL DE PHYSIQUE, 1990, 51 (01) :131-139
[7]   Long-term molecular dynamics simulation of copper plastocyanin in water [J].
Ciocchetti, A ;
Bizzarri, AR ;
Cannistraro, S .
BIOPHYSICAL CHEMISTRY, 1997, 69 (2-3) :185-198
[8]   Vibrational frequency shifts as a probe of hydrogen bonds: thermal expansion and glass transition of myoglobin in mixed solvents [J].
Demmel, F ;
Doster, W ;
Petry, W ;
Schulte, A .
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 1997, 26 (04) :327-335
[9]   Water-coupled low-frequency modes of myoglobin and lysozyme observed by inelastic neutron scattering [J].
Diehl, M ;
Doster, W ;
Petry, W ;
Schober, H .
BIOPHYSICAL JOURNAL, 1997, 73 (05) :2726-2732
[10]   THERMAL-PROPERTIES OF WATER IN MYOGLOBIN CRYSTALS AND SOLUTIONS AT SUBZERO TEMPERATURES [J].
DOSTER, W ;
BACHLEITNER, A ;
DUNAU, R ;
HIEBL, M ;
LUSCHER, E .
BIOPHYSICAL JOURNAL, 1986, 50 (02) :213-219