Gene expression profiling in neurological disorders - Toward a systems-level understanding of the brain

被引:17
作者
Baranzini, SE [1 ]
机构
[1] Univ Calif San Francisco, Sch Med, Dept Neurol, San Francisco, CA 94143 USA
关键词
gene expression; neurological disorders; data mining; brain; transcription;
D O I
10.1385/NMM:6:1:031
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
Neurological disease arises when a sufficient number of neural cells stop performing their normal functions, lose their ability to respond to local environment, and die. In the last decade, a major technological leap led to the development of efficient and cost-effective high-throughput methods for determining gene expression. This, in turn, resulted in the rapid accumulation of data describing gene expression patterns in the brain of humans and experimental animals. This article reviews several of the most commonly used technologies to retrieve transcriptional information, such as large-scale expressed sequence tag (EST) sequencing, serial analyses of gene experiment, and different DNA microarray platforms. In addition, efforts focusing on data collection, sharing, and standardization are described. A section is devoted to the latest advances in large-scale gene expression in several neurological disorders, including Alzheimer's disease, Parkinson's disease, multiple sclerosis, and epilepsy. Finally, the need for integration of different sources of data is discussed in the context of systems biology and how such integration could result in improved diagnostics, therapies, and disease prevention.
引用
收藏
页码:31 / 51
页数:21
相关论文
共 88 条
[1]   Topology of evolving networks:: Local events and universality [J].
Albert, R ;
Barabási, AL .
PHYSICAL REVIEW LETTERS, 2000, 85 (24) :5234-5237
[2]   Error and attack tolerance of complex networks [J].
Albert, R ;
Jeong, H ;
Barabási, AL .
NATURE, 2000, 406 (6794) :378-382
[3]   Global organization of metabolic fluxes in the bacterium Escherichia coli [J].
Almaas, E ;
Kovács, B ;
Vicsek, T ;
Oltvai, ZN ;
Barabási, AL .
NATURE, 2004, 427 (6977) :839-843
[4]  
Bajorek J G, 1986, Adv Neurol, V44, P489
[5]  
BARYAM Y, 1997, HUMAN CIVILIZATION, V1, P699
[6]   Analysis of a sequenced cDNA library from multiple sclerosis lesions [J].
Becker, KG ;
Mattson, DH ;
Powers, JM ;
Gado, AM ;
Biddison, WE .
JOURNAL OF NEUROIMMUNOLOGY, 1997, 77 (01) :27-38
[7]   Topological properties of citation and metabolic networks [J].
Bilke, S ;
Peterson, C .
PHYSICAL REVIEW E, 2001, 64 (03) :5
[8]   Incipient Alzheimer's disease: Microarray correlation analyses reveal major transcriptional and tumor suppressor responses [J].
Blalock, EM ;
Geddes, JW ;
Chen, KC ;
Porter, NM ;
Markesbery, WR ;
Landfield, PW .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (07) :2173-2178
[9]   High-throughput imaging of brain gene expression [J].
Brown, VM ;
Ossadtchi, A ;
Khan, AH ;
Cherry, SR ;
Leahy, RM ;
Smith, DJ .
GENOME RESEARCH, 2002, 12 (02) :244-254
[10]   Genomic scale profiling of autoimmune inflammation in the central nervous system: the nervous response to inflammation [J].
Carmody, RJ ;
Hilliard, B ;
Maguschak, K ;
Chodosh, LA ;
Chen, YH .
JOURNAL OF NEUROIMMUNOLOGY, 2002, 133 (1-2) :95-107