Thermodynamic inhibition profile of a cyclopentyl and a cyclohexyl derivative towards thrombin: The same but for different reasons

被引:26
作者
Gerlach, Christof
Smolinski, Michael
Steuber, Holger
Sotriffer, Christoph A.
Heine, Andreas
Hangauer, David G.
Klebe, Gerhard
机构
[1] Univ Marburg, Inst Pharmaceut Chem, D-35032 Marburg, Germany
[2] SUNY Buffalo, Dept Chem, Buffalo, NY 14260 USA
[3] Univ Wurzburg, Inst Pharm & Lebensmittelchem, D-97074 Wurzburg, Germany
关键词
drug design; isothermal titration calorimetry; lead structure optimization; thermodynamics; thrombin;
D O I
10.1002/anie.200701169
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
(Graph Presented) Small changes, big effects: Two thrombin inhibitors (see picture; R = cyclopentyl (1a), R = cyclohexyl (1b)) were characterized thermodynamically and computationally to explain their identical binding constants. Surprisingly, the free energy of binding is achieved with different enthalpic and entropic contributions (see plot). © 2007 Wiley-VCH Verlag GmbH & Co. KGaA.
引用
收藏
页码:8511 / 8514
页数:4
相关论文
共 15 条
[1]   A NUCLEAR MAGNETIC RESONANCE INVESTIGATION OF 3 SOLID BENZENES [J].
ANDREW, ER ;
EADES, RG .
PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES A-MATHEMATICAL AND PHYSICAL SCIENCES, 1953, 218 (1135) :537-552
[2]   FUNCTIONAL-GROUP CONTRIBUTIONS TO DRUG RECEPTOR INTERACTIONS [J].
ANDREWS, PR ;
CRAIK, DJ ;
MARTIN, JL .
JOURNAL OF MEDICINAL CHEMISTRY, 1984, 27 (12) :1648-1657
[3]   CRYSTALLOGRAPHIC STUDY OF SOLID BENZENE BY NEUTRON DIFFRACTION [J].
BACON, GE ;
CURRY, NA ;
WILSON, SA .
PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES A-MATHEMATICAL AND PHYSICAL SCIENCES, 1964, 279 (1376) :98-+
[4]   Ligand configurational entropy and protein binding [J].
Chang, Chia-en A. ;
Chen, Wei ;
Gilson, Michael K. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (05) :1534-1539
[5]   Protonation changes upon ligand binding to trypsin and thrombin: Structural interpretation based on pKa calculations and ITC experiments [J].
Czodrowski, Paul ;
Sotriffer, Christoph A. ;
Klebe, Gerhard .
JOURNAL OF MOLECULAR BIOLOGY, 2007, 367 (05) :1347-1356
[6]   Configurational entropy change of netropsin and distamycin upon DNA minor-groove binding [J].
Dolenc, Jozica ;
Baron, Riccardo ;
Oostenbrink, Chris ;
Koller, Joze ;
van Gunsteren, Wilfred F. .
BIOPHYSICAL JOURNAL, 2006, 91 (04) :1460-1470
[7]   Factorising ligand affinity:: A combined thermodynamic and crystallographic study of trypsin and thrombin inhibition [J].
Dullweber, F ;
Stubbs, MT ;
Musil, D ;
Stürzebecher, J ;
Klebe, G .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 313 (03) :593-614
[8]   Enthalpy-entropy and cavity decomposition of alkane hydration free energies: Numerical results and implications for theories of hydrophobic solvation [J].
Gallicchio, E ;
Kubo, MM ;
Levy, RM .
JOURNAL OF PHYSICAL CHEMISTRY B, 2000, 104 (26) :6271-6285
[9]   VMD: Visual molecular dynamics [J].
Humphrey, W ;
Dalke, A ;
Schulten, K .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 1996, 14 (01) :33-38
[10]  
Krishnamurthy V. M., 2006, J. Am. Chem. Soc, V128, P5802