Isolated Monohydrates of a Model Peptide Chain: Effect of a First Water Molecule on the Secondary Structure of a Capped Phenylalanine

被引:61
作者
Biswal, Himansu S. [1 ]
Loquais, Yohan [1 ]
Tardivel, Benjamin [1 ]
Gloaguen, Eric [1 ]
Mons, Michel [1 ]
机构
[1] CEA Saclay, CEA DSM IRAMIS SPAM CNRS URA 2453, Lab Francis Perrin, F-91191 Gif Sur Yvette, France
关键词
FREE-ENERGY SURFACES; GAS-PHASE; INFRARED-SPECTRA; CONFORMATIONAL ISOMERIZATION; LASER SPECTROSCOPY; ALANINE DIPEPTIDE; POTENTIAL-ENERGY; HYDRATED SUGARS; AMINO-ACIDS; CLUSTERS;
D O I
10.1021/ja108643p
中图分类号
O6 [化学];
学科分类号
070301 [无机化学];
摘要
The formation of monohydrates of capped phenylalanine model peptides, CH3-CO-Phe-NH2 and CH3-CO-Phe-NH-CH3, in a supersonic: expansion has been investigated using laser spectroscopy and quantum chemistry methods. Conformational distributions of the monohydrates have been revealed by IR/UV double-resonance spectroscopy and their structures assigned by comparison with DFT-D calculations. A careful analysis of the final hydrate distribution together with a detailed theoretical investigation of the potential energy surface of the monohydrates demonstrates that solvation occurs from the conformational distribution of the isolated peptide monomers. The distribution of the monohydrates appears to be strongly dependent on both the initial monomer conformation (extended or folded backbone) and the solvation site initially occupied by the water molecule. The solvation processes taking place during the cooling can be categorized as follows: (a) solvation without significant structural changes of the peptide, (b) solvation inducing significant distortions of the backbone but retaining the secondary structure, and (c) solvation triggering backbone isomerizations, leading to a modification of the peptide secondary structure. It is observed that solvation by a single water molecule can fold a beta-strand into a gamma-turn structure (type c) or induce a significant opening of a gamma-turn characterized by an elongated C-7 hydrogen bond (type b). These structural changes can be considered as a first step toward the polyproline II condensed-phase structure, illustrating the role played by the very first water
引用
收藏
页码:3931 / 3942
页数:12
相关论文
共 60 条
[1]
ELECTRONIC-STRUCTURE CALCULATIONS ON WORKSTATION COMPUTERS - THE PROGRAM SYSTEM TURBOMOLE [J].
AHLRICHS, R ;
BAR, M ;
HASER, M ;
HORN, H ;
KOLMEL, C .
CHEMICAL PHYSICS LETTERS, 1989, 162 (03) :165-169
[2]
The glycine-water complex [J].
Alonso, JL ;
Cocinero, EJ ;
Lesarri, A ;
Sanz, ME ;
López, JC .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2006, 45 (21) :3471-3474
[3]
[Anonymous], HYPERCHEM PROF 7 51
[4]
EVALUATED KINETIC AND PHOTOCHEMICAL DATA FOR ATMOSPHERIC CHEMISTRY SUPPLEMENT-IV - IUPAC SUBCOMMITTEE ON GAS KINETIC DATA EVALUATION FOR ATMOSPHERIC CHEMISTRY [J].
ATKINSON, R ;
BAULCH, DL ;
COX, RA ;
HAMPSON, RF ;
KERR, JA ;
TROE, J .
JOURNAL OF PHYSICAL AND CHEMICAL REFERENCE DATA, 1992, 21 (06) :1125-1568
[5]
Conformational flexibility in hydrated sugars: The glycolaldehyde-water complex [J].
Aviles-Moreno, Juan-Ramon ;
Demaison, Jean ;
Huet, Therese R. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (32) :10467-10473
[6]
Transferable Specific Scaling Factors for Interpretation of Infrared Spectra of Biomolecules from Density Functional Theory [J].
Bouteiller, Yves ;
Gillet, Jean-Christophe ;
Gregoire, Gilles ;
Schermann, Jean Pierre .
JOURNAL OF PHYSICAL CHEMISTRY A, 2008, 112 (46) :11656-11660
[7]
Evaluation of MP2, DFT, and DFT-D Methods for the Prediction of Infrared Spectra of Peptides [J].
Bouteiller, Yves ;
Poully, Jean Christophe ;
Desfrancois, Charles ;
Gregoire, Gilles .
JOURNAL OF PHYSICAL CHEMISTRY A, 2009, 113 (22) :6301-6307
[8]
Hydrogen bonding and cooperativity in isolated and hydrated sugars:: mannose, galactose, glucose, and lactose [J].
Çarçabal, P ;
Jockusch, RA ;
Hünig, I ;
Snoek, LC ;
Kroemer, RT ;
Davis, BG ;
Gamblin, DP ;
Compagnon, I ;
Oomens, J ;
Simons, JP .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (32) :11414-11425
[9]
The role of water bridges in directing the conformational preferences of 3-indole-propionic acid and tryptamine [J].
Carney, JR ;
Dian, BC ;
Florio, GM ;
Zwier, TS .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (23) :5596-5597
[10]
Case D.A., 2006, AMBER 9