The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

被引:1357
作者
Afgan, Enis [1 ]
Baker, Dannon [1 ]
van den Beek, Marius [2 ]
Blankenberg, Daniel [3 ]
Bouvier, Dave [3 ]
Cech, Martin [3 ]
Chilton, John [3 ]
Clements, Dave [1 ]
Coraor, Nate [3 ]
Eberhard, Carl [1 ]
Gruening, Bjoern [4 ,5 ]
Guerler, Aysam [1 ]
Hillman-Jackson, Jennifer [3 ]
Von Kuster, Greg [6 ]
Rasche, Eric [7 ]
Soranzo, Nicola [8 ]
Turaga, Nitesh [1 ]
Taylor, James [1 ]
Nekrutenko, Anton [3 ]
Goecks, Jeremy [9 ]
机构
[1] Johns Hopkins Univ, Dept Biol, Baltimore, MD 21218 USA
[2] Univ Paris 06, Inst Biol Paris Seine, Paris, France
[3] Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA
[4] Univ Freiburg, Dept Comp Sci, Freiburg, Germany
[5] Univ Freiburg, Ctr Biol Syst Anal ZBSA, Freiburg, Germany
[6] Penn State Univ, Acad Comp Serv, University Pk, PA 16802 USA
[7] Texas A&M Univ, Dept Biochem & Biophys, College Stn, TX 77843 USA
[8] Genome Anal Ctr, Norwich, Norfolk, England
[9] George Washington Univ, Computat Biol Inst, Washington, DC USA
基金
英国生物技术与生命科学研究理事会; 美国国家卫生研究院;
关键词
WEB; TAVERNA;
D O I
10.1093/nar/gkw343
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
High-throughput data production technologies, particularly 'next-generation' DNA sequencing, have ushered in widespread and disruptive changes to biomedical research. Making sense of the large datasets produced by these technologies requires sophisticated statistical and computational methods, as well as substantial computational power. This has led to an acute crisis in life sciences, as researchers without informatics training attempt to perform computation-dependent analyses. Since 2005, the Galaxy project has worked to address this problem by providing a framework that makes advanced computational tools usable by non experts. Galaxy seeks to make data-intensive research more accessible, transparent and reproducible by providing a Web-based environment in which users can perform computational analyses and have all of the details automatically tracked for later inspection, publication, or reuse. In this report we highlight recently added features enabling biomedical analyses on a large scale.
引用
收藏
页码:W3 / W10
页数:8
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