Different molecular size scaling regimes for inner and outer regions of proteins

被引:13
作者
Arteca, GA
机构
来源
PHYSICAL REVIEW E | 1996年 / 54卷 / 03期
关键词
D O I
10.1103/PhysRevE.54.3044
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
We study the rough statistical features of size scaling in protein backbones by using molecular descriptors associated with their central and external regions. By using a diverse set of experimental structures, we show that the mean radius of gyration and die span of backbones scale differently, leading to a ratio of ''inner'' and ''outer'' scaling size exponents of v(i)/v(o) approximate to 0.8. The span of average proteins is found to scale with the number of amino acids as R similar to n(vo), with 1/2<v(o)<3/5, thus providing a measure of the ''locally'' swollen character of the backbone near the exterior. The result holds for all classes of proteins, including those with the most compact cores.
引用
收藏
页码:3044 / 3047
页数:4
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