Correcting mesh-based force calculations to conserve both energy and momentum in molecular dynamics simulations

被引:23
作者
Skeel, Robert D.
Hardy, David J.
Phillips, James C.
机构
[1] Purdue Univ, Dept Comp Sci, W Lafayette, IN 47907 USA
[2] Univ Illinois, Beckman Inst, Urbana, IL 61801 USA
关键词
molecular dynamics; Ewald sum; force fields;
D O I
10.1016/j.jcp.2007.03.010
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
[No abstract available]
引用
收藏
页码:1 / 5
页数:5
相关论文
共 19 条
[1]  
Bishop TC, 1997, J COMPUT CHEM, V18, P1785, DOI 10.1002/(SICI)1096-987X(19971115)18:14<1785::AID-JCC7>3.0.CO
[2]  
2-G
[3]   MULTILEVEL MATRIX MULTIPLICATION AND FAST SOLUTION OF INTEGRAL-EQUATIONS [J].
BRANDT, A ;
LUBRECHT, AA .
JOURNAL OF COMPUTATIONAL PHYSICS, 1990, 90 (02) :348-370
[4]   How to mesh up Ewald sums. I. A theoretical and numerical comparison of various particle mesh routines [J].
Deserno, M ;
Holm, C .
JOURNAL OF CHEMICAL PHYSICS, 1998, 109 (18) :7678-7693
[5]   Monitoring energy drift with shadow Hamiltonians [J].
Engle, RD ;
Skeel, RD ;
Drees, M .
JOURNAL OF COMPUTATIONAL PHYSICS, 2005, 206 (02) :432-452
[6]   A SMOOTH PARTICLE MESH EWALD METHOD [J].
ESSMANN, U ;
PERERA, L ;
BERKOWITZ, ML ;
DARDEN, T ;
LEE, H ;
PEDERSEN, LG .
JOURNAL OF CHEMICAL PHYSICS, 1995, 103 (19) :8577-8593
[7]   A FAST ALGORITHM FOR PARTICLE SIMULATIONS [J].
GREENGARD, L ;
ROKHLIN, V .
JOURNAL OF COMPUTATIONAL PHYSICS, 1987, 73 (02) :325-348
[8]   GENERALIZED VERLET ALGORITHM FOR EFFICIENT MOLECULAR DYNAMICS SIMULATIONS WITH LONG-RANGE INTERACTIONS [J].
Grubmueller, H. ;
Heller, H. ;
Windemuth, A. ;
Schulten, K. .
MOLECULAR SIMULATION, 1991, 6 (1-3) :121-142
[9]  
Hardy D.J., 2006, UIUCDCSR20062546
[10]  
Hockney R. W., 1981, Computer Simulation Using Particles