Highly efficient single molecule detection in microstructures

被引:22
作者
Dörre, K
Stephan, J
Lapczyna, M
Stuke, M
Dunkel, H
Eigen, M
机构
[1] Max Planck Inst Biophys Chem, Abt Biochem Kinet, D-37077 Gottingen, Germany
[2] Max Planck Inst Biophys Chem, Laserphys Abt, D-37077 Gottingen, Germany
关键词
fluorescence single molecule detection; confocal set-up; microstructure; elliptical volume; multi-element; diffusion and flow;
D O I
10.1016/S0168-1656(00)00415-6
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
For DNA single molecule sequencing, the complete detection of all dye-labeled monomers which are cleaved off during the sequencing reaction is an essential requirement. In this work we address the feasibility of single molecule detection in microstructures with a confocal multi element set-up. We present statistical data on single molecule recognition and explain a refined data evaluation technique for single molecule burst analysis. From these data the signal-to-noise ratio in microstructures is evaluated as well as the overall detection efficiency. So far, detection efficiencies of single molecule events of up to 60% have been shown in microstructures. (C) 2001 Elsevier Science B.V. All rights reserved.
引用
收藏
页码:225 / 236
页数:12
相关论文
共 32 条
[1]   Single molecule fluorescence spectroscopy at ambient temperature [J].
Ambrose, WP ;
Goodwin, PM ;
Jett, JH ;
Van Orden, A ;
Werner, JH ;
Keller, RA .
CHEMICAL REVIEWS, 1999, 99 (10) :2929-2956
[2]   DETECTION OF SINGLE RHODAMINE-6G MOLECULES IN LEVITATED MICRODROPLETS [J].
BARNES, MD ;
NG, KC ;
WHITTEN, WB ;
RAMSEY, JM .
ANALYTICAL CHEMISTRY, 1993, 65 (17) :2360-2365
[3]  
BARNES MD, 1995, ANAL CHEM, V67, P418
[4]   Single-molecule identification of Coumarin-120 by time-resolved fluorescence detection: Comparison of one- and two-photon excitation in solution [J].
Brand, L ;
Eggeling, C ;
Zander, C ;
Drexhage, KH ;
Seidel, CAM .
JOURNAL OF PHYSICAL CHEMISTRY A, 1997, 101 (24) :4313-4321
[5]   Two beam cross correlation:: A method to characterize transport phenomena in micrometer-sized structures [J].
Brinkmeier, M ;
Dörre, K ;
Stephan, J ;
Eigen, M .
ANALYTICAL CHEMISTRY, 1999, 71 (03) :609-616
[6]   RAPID DNA SEQUENCING BASED UPON SINGLE MOLECULE DETECTION [J].
DAVIS, LM ;
FAIRFIELD, FR ;
HARGER, CA ;
JETT, JH ;
KELLER, RA ;
HAHN, JH ;
KRAKOWSKI, LA ;
MARRONE, BL ;
MARTIN, JC ;
NUTTER, HL ;
RATLIFF, RL ;
SHERA, EB ;
SIMPSON, DJ ;
SOPER, SA .
GENETIC ANALYSIS-BIOMOLECULAR ENGINEERING, 1991, 8 (01) :1-7
[7]  
Dorre K., 1997, Bioimaging, V5, P139, DOI 10.1002/1361-6374(199709)5:3<139::AID-BIO8>3.3.CO
[8]  
2-R
[9]   Photobleaching of fluorescent dyes under conditions used for single-molecule detection: Evidence of two-step photolysis [J].
Eggeling, C ;
Widengren, J ;
Rigler, R ;
Seidel, CAM .
ANALYTICAL CHEMISTRY, 1998, 70 (13) :2651-2659
[10]   SORTING SINGLE MOLECULES - APPLICATION TO DIAGNOSTICS AND EVOLUTIONARY BIOTECHNOLOGY [J].
EIGEN, M ;
RIGLER, R .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (13) :5740-5747