Human knockout research: new horizons and opportunities

被引:34
作者
Alkuraya, Fowzan S. [1 ,2 ]
机构
[1] King Faisal Specialist Hosp & Res Ctr, Dept Genet, Riyadh 11211, Saudi Arabia
[2] Alfaisal Univ, Coll Med, Dept Anat & Cell Biol, Riyadh, Saudi Arabia
关键词
loss of function; autozygome; evolution; druggable targets; adaptation; RECENT POSITIVE SELECTION; OF-FUNCTION VARIANTS; SUSCEPTIBILITY LOCI; CROHNS-DISEASE; LOW-FREQUENCY; HUMAN GENOME; RESISTANCE; IDENTIFICATION; ASSOCIATION; MUTATIONS;
D O I
10.1016/j.tig.2014.11.003
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Although numerous approaches have been pursued to understand the function of human genes, Mendelian genetics has by far provided the most compelling and medically actionable dataset. Biallelic loss-of-function (LOF) mutations are observed in the majority of autosomal recessive Mendelian disorders, representing natural human knockouts and offering a unique opportunity to study the physiological and developmental context of these genes. The restriction of such context to 'disease' states is artificial, however, and the recent ability to survey entire human genomes for biallelic LOF mutations has revealed a surprising landscape of knockout events in 'healthy' individuals, sparking interest in their role in phenotypic diversity beyond disease causation. As I discuss in this review, the potentially wide implications of human knockout research warrant increased investment and multidisciplinary collaborations to overcome existing challenges and reap its benefits.
引用
收藏
页码:108 / 115
页数:8
相关论文
共 84 条
[1]   Loss-of-function variant in DNASE1L3 causes a familial form of systemic lupus erythematosus [J].
Al-Mayouf, Sulaiman M. ;
Sunker, Asma ;
Abdwani, Reem ;
Al Abrawi, Safiya ;
Almurshedi, Fathiya ;
Alhashmi, Nadia ;
Al Sonbul, Abdullah ;
Sewairi, Wafaa ;
Qari, Aliya ;
Abdallah, Eiman ;
Al-Owain, Mohammed ;
Al Motywee, Saleh ;
Al-Rayes, Hanan ;
Hashem, Mais ;
Khalak, Hanif ;
Al-Jebali, Latifa ;
Alkuraya, Fowzan S. .
NATURE GENETICS, 2011, 43 (12) :1186-1188
[2]   Autozygome decoded [J].
Alkuraya, Fowzan S. .
GENETICS IN MEDICINE, 2010, 12 (12) :765-771
[3]   5-Oxoprolinase deficiency: report of the first human OPLAH mutation [J].
Almaghlouth, I. A. ;
Mohamed, J. Y. ;
Al-Amoudi, M. ;
Al-Ahaidib, L. ;
Al-Odaib, A. ;
Alkuraya, F. S. .
CLINICAL GENETICS, 2012, 82 (02) :193-196
[4]   Autozygome Sequencing Expands the Horizon of Human Knockout Research and Provides Novel Insights into Human Phenotypic Variation [J].
Alsalem, Ahmed B. ;
Halees, Anason S. ;
Anazi, Shamsa ;
Alshamekh, Shomoukh ;
Alkuraya, Fowzan S. .
PLOS GENETICS, 2013, 9 (12)
[5]   Gene inactivation and its implications for annotation in the era of personal genomics [J].
Balasubramanian, Suganthi ;
Habegger, Lukas ;
Frankish, Adam ;
MacArthur, Daniel G. ;
Harte, Rachel ;
Tyler-Smith, Chris ;
Harrow, Jennifer ;
Gerstein, Mark .
GENES & DEVELOPMENT, 2011, 25 (01) :1-10
[6]  
Beaumont Kimberley A, 2008, Hum Mutat, V29, pE88, DOI 10.1002/humu.20788
[7]  
Biesecker LG, 2014, NEW ENGL J MED, V370, P2418, DOI [10.1056/NEJMra1312543, 10.1056/NEJMc1408914]
[8]   A 52-Week Placebo-Controlled Trial of Evolocumab in Hyperlipidemia [J].
Blom, Dirk J. ;
Hala, Tomas ;
Bolognese, Michael ;
Lillestol, Michael J. ;
Toth, Phillip D. ;
Burgess, Lesley ;
Ceska, Richard ;
Roth, Eli ;
Koren, Michael J. ;
Ballantyne, Christie M. ;
Monsalvo, Maria Laura ;
Tsirtsonis, Kate ;
Kim, Jae B. ;
Scott, Rob ;
Wasserman, Scott M. ;
Stein, Evan A. .
NEW ENGLAND JOURNAL OF MEDICINE, 2014, 370 (19) :1809-1819
[9]   Rare-disease genetics in the era of next-generation sequencing: discovery to translation [J].
Boycott, Kym M. ;
Vanstone, Megan R. ;
Bulman, Dennis E. ;
MacKenzie, Alex E. .
NATURE REVIEWS GENETICS, 2013, 14 (10) :681-691
[10]   Hunting human disease genes: lessons from the past, challenges for the future [J].
Brunham, Liam R. ;
Hayden, Michael R. .
HUMAN GENETICS, 2013, 132 (06) :603-617