Selective fluorescent chemosensor for the bacterial alarmone (p)ppGpp

被引:89
作者
Rhee, Hyun-Woo [1 ]
Lee, Chang-Ro [2 ]
Cho, Seung-Hyon [2 ]
Song, Mi-Ryung [3 ]
Cashel, Michael [4 ]
Choy, Hyon E. [3 ]
Seok, Young-Jae [2 ]
Hong, Jong-In [1 ]
机构
[1] Seoul Natl Univ, Coll Nat Resources, Dept Chem, Seoul 151747, South Korea
[2] Seoul Natl Univ, Dept Biol Sci, Seoul 151742, South Korea
[3] Chonnam Natl Univ, Sch Med, Dept Microbiol, Kwangju 501746, South Korea
[4] Natl Inst Hlth, NICHD, Mol Genet Lab, Bethesda, MD 20892 USA
关键词
D O I
10.1021/ja0759139
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
We have developed the first selective fluorescent chemosensor (PyDPA) for (p)ppGpp, a bacterial and plant alarmone. By using pyrene-excimer fluorescence, PyDPA shows very good selectivity for (p)ppGpp from among other nucleotides in water. PyDPA was used for the real-time detection of in vitro ppGpp synthesis by bacterial ribosomal complexes.
引用
收藏
页码:784 / +
页数:3
相关论文
共 29 条
[1]   Structural basis for transcription regulation by alarmone ppGpp [J].
Artsimovitch, I ;
Patlan, V ;
Sekine, SI ;
Vassylyeva, MN ;
Hosaka, T ;
Ochi, K ;
Yokoyama, S ;
Vassylyev, DG .
CELL, 2004, 117 (03) :299-310
[2]   New horizons for (p)ppGpp in bacterial and plant physiology [J].
Braeken, K ;
Moris, M ;
Daniels, R ;
Vanderleyden, J ;
Michiels, J .
TRENDS IN MICROBIOLOGY, 2006, 14 (01) :45-54
[3]  
Cashel M, 1996, ESCHERICHIA COLI SAL, P1458
[4]  
Cashel M., 1994, METHODS MOL GENETICS, P341
[5]   2 COMPOUNDS IMPLICATED IN FUNCTION OF RC GENE OF ESCHERICHIA COLI [J].
CHASHEL, M ;
GALLANT, J .
NATURE, 1969, 221 (5183) :838-&
[6]   A fluorescent pyrophosphate sensor via excimer formation in water [J].
Cho, HK ;
Lee, DH ;
Hong, JI .
CHEMICAL COMMUNICATIONS, 2005, (13) :1690-1692
[7]   The study of guanosine 5′-diphosphate 3′-diphosphate-mediated transcription regulation in vitro using a coupled transcription-translation system [J].
Choy, HE .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (10) :6783-6789
[8]   A RAPID METHOD FOR THE DETERMINATION OF GUANOSINE 5'-DIPHOSPHATE-3'-DIPHOSPHATE AND GUANOSINE 5'-TRIPHOSPHATE-3'-DIPHOSPHATE BY HIGH-PERFORMANCE LIQUID-CHROMATOGRAPHY [J].
FISCHER, M ;
ZIMMERMAN, TP ;
SHORT, SA .
ANALYTICAL BIOCHEMISTRY, 1982, 121 (01) :135-139
[9]   SYNTHESIS OF GUANOSINE TETRAPHOSPHATE AND PENTAPHOSPHATE REQUIRES PRESENCE OF A CODON-SPECIFIC, UNCHARGED TRANSFER RIBONUCLEIC-ACID IN ACCEPTOR SITE OF RIBOSOMES - (STRINGENT CONTROL PPGPP (MSI) AND PPPGPP (MSII) PROTEIN SYNTHESIS ESCHERICHIA-COLI) [J].
HASELTINE, WA ;
BLOCK, R .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1973, 70 (05) :1564-1568
[10]   INVITRO DEGRADATION OF GUANOSINE TETRAPHOSPHATE (PPGPP) BY AN ENZYME ASSOCIATED WITH RIBOSOMAL FRACTION FROM ESCHERICHIA-COLI [J].
HEINEMEYER, EA ;
RICHTER, D .
FEBS LETTERS, 1977, 84 (02) :357-361