The UCSC Genome Browser database: extensions and updates 2011

被引：242

作者：

Dreszer, Timothy R. ^{[1
]}

Karolchik, Donna ^{[1
]}

Zweig, Ann S. ^{[1
]}

Hinrichs, Angie S. ^{[1
]}

Raney, Brian J. ^{[1
]}

Kuhn, Robert M. ^{[1
]}

Meyer, Laurence R. ^{[1
]}

Wong, Mathew ^{[1
]}

Sloan, Cricket A. ^{[1
]}

Rosenbloom, Kate R. ^{[1
]}

Roe, Greg ^{[1
]}

Rhead, Brooke ^{[1
]}

Pohl, Andy ^{[1
,2
]}

Malladi, Venkat S. ^{[1
]}

Li, Chin H. ^{[1
]}

Learned, Katrina ^{[1
]}

Kirkup, Vanessa ^{[1
]}

Hsu, Fan ^{[1
]}

Harte, Rachel A. ^{[1
]}

Guruvadoo, Luvina ^{[1
]}

Goldman, Mary ^{[1
]}

Giardine, Belinda M. ^{[3
]}

Fujita, Pauline A. ^{[1
]}

Diekhans, Mark ^{[1
]}

Cline, Melissa S. ^{[1
]}

Clawson, Hiram ^{[1
]}

Barber, Galt P. ^{[1
]}

Haussler, David ^{[1
,4
]}

Kent, W. James ^{[1
]}

机构：

[1] UCSC, Sch Engn, Ctr Biomol Sci & Engn, Santa Cruz, CA 95064 USA

[2] Ctr Genom Regulat CRG, Barcelona, Spain

[3] Penn State Univ, Huck Inst Life Sci, Ctr Comparat Genom & Bioinformat, University Pk, PA 16802 USA

[4] UCSC, Howard Hughes Med Inst, Santa Cruz, CA 95064 USA

来源：

NUCLEIC ACIDS RESEARCH | 2012年 / 40卷 / D1期

关键词：

SEQUENCE; FORMAT;

D O I：

10.1093/nar/gkr1055

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The University of California Santa Cruz Genome Browser (http://genome.ucsc.edu) offers online public access to a growing database of genomic sequence and annotations for a wide variety of organisms. The Browser is an integrated tool set for visualizing, comparing, analyzing and sharing both publicly available and user-generated genomic data sets. In the past year, the local database has been updated with four new species assemblies, and we anticipate another four will be released by the end of 2011. Further, a large number of annotation tracks have been either added, updated by contributors, or remapped to the latest human reference genome. Among these are new phenotype and disease annotations, UCSC genes, and a major dbSNP update, which required new visualization methods. Growing beyond the local database, this year we have introduced 'track data hubs', which allow the Genome Browser to provide access to remotely located sets of annotations. This feature is designed to significantly extend the number and variety of annotation tracks that are publicly available for visualization and analysis from within our site. We have also introduced several usability features including track search and a context-sensitive menu of options available with a right-click anywhere on the Browser's image.

引用

页码：D918 / D923

页数：6

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