Dynamics of viral infections: incorporating both the intracellular and extracellular levels

被引:35
作者
Haseltine, EL [1 ]
Rawlings, JB [1 ]
Yin, J [1 ]
机构
[1] Univ Wisconsin, Dept Chem & Biol Engn, Madison, WI 53706 USA
基金
美国国家科学基金会;
关键词
mathematical modeling; population balance; systems biology; computational biology; virus dynamics;
D O I
10.1016/j.compchemeng.2004.08.022
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
To date, most models of viral infections have focused exclusively on modeling either the intracellular level or the extracellular level. To more realistically model these infections, we propose incorporating both levels of information into the description. One way of performing this task in a deterministic setting is to derive cell population balances from the equation of continuity. We apply such a balance to obtain a two-level model of a viral infection. We then use numerical simulation to demonstrate both cell culture and in vivo responses given a variety of experimental conditions. We compare these responses to those obtained from applying other commonly used models. The results demonstrate that, in contrast to commonly used models, the cell population balance provides a more intuitive and flexible modeling framework for incorporating both the intracellular and extracellular events occurring during viral infections. This improved capability to represent the trends in the biological measurements of interest offers a more systematic and quantitative understanding of how viral infections propagate and how to best control this propagation. (c) 2004 Elsevier Ltd. All rights reserved.
引用
收藏
页码:675 / 686
页数:12
相关论文
共 38 条
[1]   Automated flow cytometry for acquisition of time-dependent population data [J].
Abu-Absi, NR ;
Zamamiri, A ;
Kacmar, J ;
Balogh, SJ ;
Srienc, F .
CYTOMETRY PART A, 2003, 51A (02) :87-96
[2]  
Arkin A, 1998, GENETICS, V149, P1633
[3]  
Bailey JE., 1986, BIOCH ENG FUNDAMENTA, P421
[4]  
BENTLEY WE, 1994, CHEM ENG SCI, V49, P4133
[5]   Virus dynamics and drug therapy [J].
Bonhoeffer, S ;
May, RM ;
Shaw, GM ;
Nowak, MA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (13) :6971-6976
[6]   USING KRYLOV METHODS IN THE SOLUTION OF LARGE-SCALE DIFFERENTIAL-ALGEBRAIC SYSTEMS [J].
BROWN, PN ;
HINDMARSH, AC ;
PETZOLD, LR .
SIAM JOURNAL ON SCIENTIFIC COMPUTING, 1994, 15 (06) :1467-1488
[7]   Quantifying viral propagation in vitro: Toward a method for characterization of complex phenotypes [J].
Duca, KA ;
Lam, V ;
Keren, I ;
Endler, EE ;
Letchworth, GJ ;
Novella, IS ;
Yin, J .
BIOTECHNOLOGY PROGRESS, 2001, 17 (06) :1156-1165
[8]   THE HYPERCYCLE - COUPLING OF RNA AND PROTEIN-BIOSYNTHESIS IN THE INFECTION CYCLE OF AN RNA BACTERIOPHAGE [J].
EIGEN, M ;
BIEBRICHER, CK ;
GEBINOGA, M ;
GARDINER, WC .
BIOCHEMISTRY, 1991, 30 (46) :11005-11018
[9]  
ENDLER EE, 2003, BIOTECHNOL BIOENG, V17, P1156
[10]  
Endy D, 1997, BIOTECHNOL BIOENG, V55, P375, DOI 10.1002/(SICI)1097-0290(19970720)55:2<375::AID-BIT15>3.0.CO