DDBJ with new system and face

被引：25

作者：

Sugawara, H. ^{[1
,2
]}

Ogasawara, O. ^{[1
,2
]}

Okubo, K. ^{[1
,2
]}

Gojobori, T. ^{[1
,2
]}

Tateno, Y. ^{[1
,2
]}

机构：

[1] Natl Inst Genet, Res Org Informat & Syst, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan

[2] Natl Inst Genet, Res Org Informat & Syst, DNA Data Bank Japan, Mishima, Shizuoka 4118540, Japan

来源：

NUCLEIC ACIDS RESEARCH | 2008年 / 36卷

基金：

日本学术振兴会;

关键词：

D O I：

10.1093/nar/gkm889

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

DDBJ (http://www.ddbj.nig.ac.jp) collected and released 1 880 115 entries or 1 134 086 245 bases in the period from July 2006 to June 2007. The released data contains the high-throughput cDNAs of cricket and high-quality draft genome of medaka among others. Our computer system has been upgraded since March 2007. Another new aspect is an efficient data retrieval tool that has recently been equipped and served at DDBJ. It is called All-round Retrieval for Sequence and Annotation, which enables the user to search for keywords also in the Feature/Qualifier of the International Nucleotide Sequence Database Collaboration (http://www.insdc.org/). We will also replace our home page with a more efficient one by the end of 2007.

引用

页码：D22 / D24

页数：3

共 13 条

[1] [Anonymous], BERLINERS INFORM TAG
[2] [Anonymous], B MATH STAT
[3] A tree of life based on protein domain organizations
Fukami-Kobayashi, Kaoru
Minezaki, Yoshiaki
Tateno, Yoshio
Nishikawa, Ken
[J]. MOLECULAR BIOLOGY AND EVOLUTION, 2007, 24 (05) : 1181 - 1189
[4] Genome Information Broker (GIB): data retrieval and comparative analysis system for completed microbial genomes and more
Fumoto, M
Miyazaki, S
Sugawara, H
[J]. NUCLEIC ACIDS RESEARCH, 2002, 30 (01) : 66 - 68
[5] The medaka draft genome and insights into vertebrate genome evolution
Kasahara, Masahiro
Naruse, Kiyoshi
Sasaki, Shin
Nakatani, Yoichiro
Qu, Wei
Ahsan, Budrul
Yamada, Tomoyuki
Nagayasu, Yukinobu
Doi, Koichiro
Kasai, Yasuhiro
Jindo, Tomoko
Kobayashi, Daisuke
Shimada, Atsuko
Toyoda, Atsushi
Kuroki, Yoko
Fujiyama, Asao
Sasaki, Takashi
Shimizu, Atsushi
Asakawa, Shuichi
Shimizu, Nobuyoshi
Hashimoto, Shin-ichi
Yang, Jun
Lee, Yongjun
Matsushima, Kouji
Sugano, Sumio
Sakaizumi, Mitsuru
Narita, Takanori
Ohishi, Kazuko
Haga, Shinobu
Ohta, Fumiko
Nomoto, Hisayo
Nogata, Keiko
Morishita, Tomomi
Endo, Tomoko
Shin-, Tadasu, I
Takeda, Hiroyuki
Morishita, Shinichi
Kohara, Yuji
[J]. NATURE, 2007, 447 (7145) : 714 - 719
[6] Exploration and grading of possible genes from 183 bacterial strains by a common protocol to identification of new genes: Gene Trek in Prokaryote Space (GTPS)
Kosuge, Takehide
Abe, Takashi
Okido, Toshihisa
Tanaka, Naoto
Hirahata, Masaki
Maruyama, Yutaka
Mashima, Jun
Tomiki, Aki
Kurokawa, Motoyoshi
Himeno, Ryutaro
Fukuchi, Satoshi
Miyazaki, Satoru
Gojobori, Takashi
Tateno, Yoshio
Sugawara, Hideaki
[J]. DNA RESEARCH, 2006, 13 (06) : 245 - 254
[7] The diploid genome sequence of an individual human
Levy, Samuel
Sutton, Granger
Ng, Pauline C.
Feuk, Lars
Halpern, Aaron L.
Walenz, Brian P.
Axelrod, Nelson
Huang, Jiaqi
Kirkness, Ewen F.
Denisov, Gennady
Lin, Yuan
MacDonald, Jeffrey R.
Pang, Andy Wing Chun
Shago, Mary
Stockwell, Timothy B.
Tsiamouri, Alexia
Bafna, Vineet
Bansal, Vikas
Kravitz, Saul A.
Busam, Dana A.
Beeson, Karen Y.
Mclntosh, Tina C.
Remington, Karin A.
Abril, Josep F.
Gill, John
Borman, Jon
Rogers, Yu-Hui
Frazier, Marvin E.
Scherer, Stephen W.
Strausberg, Robert L.
Venter, J. Craig
[J]. PLOS BIOLOGY, 2007, 5 (10) : 2113 - 2144
[8] DDBJ in preparation for overview of research activities behind data submissions
Okubo, Kousaku
Sugawara, Hideaki
Gojobori, Takashi
Tateno, Yoshio
[J]. NUCLEIC ACIDS RESEARCH, 2006, 34 : D6 - D9
[9] brachyenteron is necessary for morphogenesis of the posterior gut but not for anteroposterior axial elongation from the posterior growth zone in the intermediate-germband cricket Gryllus bimaculatus
Shinmyo, Yohei
Mito, Taro
Uda, Tomohiro
Nakamura, Taro
Miyawaki, Katsuyuki
Ohuchi, Hideyo
Noji, Sumihare
[J]. DEVELOPMENT, 2006, 133 (22): : 4539 - 4547
[10] Biological SOAP servers and web services provided by the public sequence data bank
Sugawara, H
Miyazaki, S
[J]. NUCLEIC ACIDS RESEARCH, 2003, 31 (13) : 3836 - 3839

← 1 2 →