Structural characterization of a flavin-specific RNA aptamer by chemical probing

被引:16
作者
Burgstaller, P [1 ]
Famulok, M [1 ]
机构
[1] UNIV MUNICH, GENZENTRUM, INST BIOCHEM, D-81375 MUNICH, GERMANY
关键词
D O I
10.1016/0960-894X(96)00189-8
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
In a previous study, an RNA aptamer for the specific recognition of flavin cofactors was isolated from a combinatorial RNA-pool. We have now carried out a structural analysis of this RNA by chemical probing and identified residues protected from modification in the presence of the cofactor and modifications that interfere with its complexation. An induced fit of the RNA motif occurs upon cofactor binding. Our analysis led to a refined secondary structure model for the FMN/RNA complex. (C) 1996 Elsevier Science Ltd
引用
收藏
页码:1157 / 1162
页数:6
相关论文
共 34 条
[1]   HIV-1 REV REGULATION INVOLVES RECOGNITION OF NON-WATSON-CRICK BASE-PAIRS IN VIRAL-RNA [J].
BARTEL, DP ;
ZAPP, ML ;
GREEN, MR ;
SZOSTAK, JW .
CELL, 1991, 67 (03) :529-536
[2]   SELECTION OF SINGLE-STRANDED-DNA MOLECULES THAT BIND AND INHIBIT HUMAN THROMBIN [J].
BOCK, LC ;
GRIFFIN, LC ;
LATHAM, JA ;
VERMAAS, EH ;
TOOLE, JJ .
NATURE, 1992, 355 (6360) :564-566
[3]   ISOLATION OF RNA APTAMERS FOR BIOLOGICAL COFACTORS BY IN-VITRO SELECTION [J].
BURGSTALLER, P ;
FAMULOK, M .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION IN ENGLISH, 1994, 33 (10) :1084-1087
[4]   Structural probing and damage selection of citrulline- and arginine-specific RNA aptamers identify base positions required for binding [J].
Burgstaller, P ;
Kochoyan, M ;
Famulok, M .
NUCLEIC ACIDS RESEARCH, 1995, 23 (23) :4769-4776
[5]   INVITRO SELECTION AND EVOLUTION OF RNA - APPLICATIONS FOR CATALYTIC RNA, MOLECULAR RECOGNITION, AND DRUG DISCOVERY [J].
BURKE, JM ;
BERZALHERRANZ, A .
FASEB JOURNAL, 1993, 7 (01) :106-112
[6]   PROBING THE STRUCTURE OF RNAS IN SOLUTION [J].
EHRESMANN, C ;
BAUDIN, F ;
MOUGEL, M ;
ROMBY, P ;
EBEL, JP ;
EHRESMANN, B .
NUCLEIC ACIDS RESEARCH, 1987, 15 (22) :9109-9128
[7]   RNA SELECTION - APTAMERS ACHIEVE THE DESIRED RECOGNITION [J].
ELLINGTON, AD .
CURRENT BIOLOGY, 1994, 4 (05) :427-429
[8]   SELECTION INVITRO OF SINGLE-STRANDED-DNA MOLECULES THAT FOLD INTO SPECIFIC LIGAND-BINDING STRUCTURES [J].
ELLINGTON, AD ;
SZOSTAK, JW .
NATURE, 1992, 355 (6363) :850-852
[9]   INVITRO SELECTION OF SPECIFIC LIGAND-BINDING NUCLEIC-ACIDS [J].
FAMULOK, M ;
SZOSTAK, JW .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION IN ENGLISH, 1992, 31 (08) :979-988
[10]   MOLECULAR RECOGNITION OF AMINO-ACIDS BY RNA-APTAMERS - AN L-CITRULLINE BINDING RNA MOTIF AND ITS EVOLUTION INTO AN L-ARGININE BINDER [J].
FAMULOK, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1994, 116 (05) :1698-1706