Characterization of the conformational probability of N-acetyl-phenylalanyl-NH2 by RHF, DFT, and MP2 computation and AIM analyses, confirmed by jet-cooled infrared data

被引:27
作者
Chass, GA
Mirasol, RS
Setiadi, DH
Tang, TH
Chin, W
Mons, M
Dimicoli, I
Dognon, JP
Viskolcz, B
Lovas, S
Penke, B
Csizmadia, IG
机构
[1] GIOCOMMS, Toronto, ON M5S 2K2, Canada
[2] Univ Toronto, Lash Miller Chem Labs, Dept Chem, Toronto, ON M5G 2E8, Canada
[3] CNRS, URA 2453, Serv Photons Atomes & Mol, Lab Francis Perrin, F-91191 Gif Sur Yvette, France
[4] Ctr Etud Saclay, CEA, DSM, DRECAM, F-91191 Gif Sur Yvette, France
[5] Univ Szeged, Juhasz Gyula Teaching Coll, Dept Chem, H-6725 Szeged, Hungary
[6] Creighton Univ, Sch Med, Dept Biomed Sci, Omaha, NE 68178 USA
[7] Univ Szeged, Dept Med Chem, H-6720 Szeged, Hungary
[8] Univ Szeged, Hungarian Acad Sci, Prot Chem Res Grp, H-6720 Szeged, Hungary
[9] BIFI, Inst Biocomputac& Fis Sistemas Complejos, Zaragoza 50009, Spain
[10] Zymeworks Inc, Vancouver, BC V6H 1H6, Canada
关键词
D O I
10.1021/jp040720i
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Computational and experimental determinations were carried out in parallel on the conformational probability of N-Acetyl-Phenylalanine-NH2 (NAPA). Ab initio computations were completed at the BLYP/6-311G(df,p), B3LYP/6-31G(d), B3LYP/6-31G(d,p), and B3LYP/6-31+G(d) levels of theory, labeled L/61fp, B/6, B/6p, and B/6+, respectively. Three experimentally identified conformers were compared with theoretical data, confirming their identities as the beta(anti)(L), gamma(gauche+)(L), and gamma(gauche-)(L) (BACKBONE(SIDECHAIN)) conformers. Evidence comes from matching experimental and theoretical data for all three constituent N-H stretches of NAPA, with a Delta Experimental-Theoretical = similar to 1-3 cm(-1), similar to 0-5 cm(-1), and similar to 1-6 cm(-1), at the U61fp and B/6+ levels, respectively. Corrected-ZPE relative energies were computed to be 0.14, 0.00, 0.26 and 0.00, 0.67, 0.57 (kcal*mol(-1)) for the beta(anti)(L), gamma(gauche+)(L), and gamma(gauche-)(L) conformers, respectively, at the L/61fp and B/6+ levels, respectively. The MP2/6-31+G(d) level of theory was subsequently found to give similar relative energies. Characterization of the intramolecular interactions responsible for red and blue shifting of the N-H stretches showed the existence of the following intramolecular interactions: C=O-[i] --- HN[i], (Ar-[i])-C gamma --- HN[i+1], (Ar-[i])-C-delta-H --- O=C[i-1] for beta(anti)(L); C=O[i-1] --- HN[i+1], (Ar-[i])-C-gamma --- M[i+1], (Ar-[i])-C-H --- O=C-[i] for gamma(guache+)(L); and C=O[i-1] --- HN[i+1] for gamma(gauche-)(L). Each of these interactions were further investigated and subsequently characterized by orbital population and Atoms-In-Molecules (AIM) analyses, with the identity of overlap and bond critical points (BCP) serving as 'scoring criteria', respectively. Experimental and theoretical carbonyl stretches were also compared and showed good agreement, adding further strength to the synergy between experiment and theory.
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收藏
页码:5289 / 5302
页数:14
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