DNA replication timing data corroborate in silico human replication origin predictions

被引:31
作者
Audit, B. [1 ,2 ]
Nicolay, S. [1 ,2 ]
Huvet, M. [3 ]
Touchon, M. [4 ]
d'Aubenton-Carafa, Y. [3 ]
Thermes, C. [3 ]
Arneodo, A. [1 ,2 ]
机构
[1] Ecole Normale Super Lyon, CNRS, Lab Joliot Curie, F-69364 Lyon 07, France
[2] Ecole Normale Super Lyon, CNRS, Phys Lab, F-69364 Lyon, France
[3] CNRS, Ctr Genet Mol, F-91198 Gif Sur Yvette, France
[4] CNRS, Inst Pasteur, Paris, France
关键词
D O I
10.1103/PhysRevLett.99.248102
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
We develop a wavelet-based multiscale pattern recognition methodology to disentangle the replication- from the transcription-associated compositional strand asymmetries observed in the human genome. Comparing replication skew profiles to recent high-resolution replication timing data reveals that most of the putative replication origins that border the so-identified replication domains are replicated earlier than their surroundings whereas the central regions replicate late in the S phase. We discuss the implications of this first experimental confirmation of these replication origin predictions that are likely to be early replicating and active in most tissues.
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页数:4
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