Using a deoxyribozyme ligase and rolling circle amplification to detect a non-nucleic acid analyte, ATP

被引:172
作者
Cho, EJ [1 ]
Yang, LT [1 ]
Levy, M [1 ]
Ellington, AD [1 ]
机构
[1] Univ Texas, Inst Cell & Mol Biol, Dept Chem & Biochem, Austin, TX 78712 USA
关键词
D O I
10.1021/ja043490u
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
An allosteric ribozyme (aptazyme) has been used to transduce the binding of a small organic analyte (ATP) into the ligation of a circular template for rolling circle amplification (RCA). An ATP-activated deoxyribozyme ligase was immobilized on a glass slide and, upon addition of ATP, catalyzed the ligation of a circular padlock probe. The ligated products could be directly amplified and visualized via RCA. The coupled reaction exhibited could detect as little as 1 μM of ATP and could discriminate against structurally similar nucleotides such as GTP, CTP, and UTP. Cooperative ATP activation of the deoxyribozyme was faithfully mimicked by RCA, yielding an amplified switch" that was responsive to ATP concentration. Copyright © 2005 American Chemical Society."
引用
收藏
页码:2022 / 2023
页数:2
相关论文
共 26 条
  • [1] Homogeneous detection of single rolling circle replication products
    Blab, GA
    Schmidt, T
    Nilsson, M
    [J]. ANALYTICAL CHEMISTRY, 2004, 76 (02) : 495 - 498
  • [2] Engineered allosteric ribozymes as biosensor components
    Breaker, RR
    [J]. CURRENT OPINION IN BIOTECHNOLOGY, 2002, 13 (01) : 31 - 39
  • [3] ROLLING-CIRCLE RNA-SYNTHESIS - CIRCULAR OLIGONUCLEOTIDES AS EFFICIENT SUBSTRATES FOR T7 RNA-POLYMERASE
    DAUBENDIEK, SL
    RYAN, K
    KOOL, ET
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1995, 117 (29) : 7818 - 7819
  • [4] INVITRO SELECTION OF RNA MOLECULES THAT BIND SPECIFIC LIGANDS
    ELLINGTON, AD
    SZOSTAK, JW
    [J]. NATURE, 1990, 346 (6287) : 818 - 822
  • [5] Nucleic acid aptamers - From selection in vitro to applications in vivo
    Famulok, M
    Mayer, G
    Blind, M
    [J]. ACCOUNTS OF CHEMICAL RESEARCH, 2000, 33 (09) : 591 - 599
  • [6] Protein detection using proximity-dependent DNA ligation assays
    Fredriksson, S
    Gullberg, M
    Jarvius, J
    Olsson, C
    Pietras, K
    Gústafsdóttir, SM
    Östman, A
    Landegren, U
    [J]. NATURE BIOTECHNOLOGY, 2002, 20 (05) : 473 - 477
  • [7] Rolling circle amplification of DNA immobilized on solid surfaces and its application to multiplex mutation detection
    Hatch, A
    Sano, T
    Misasi, J
    Smith, CL
    [J]. GENETIC ANALYSIS-BIOMOLECULAR ENGINEERING, 1999, 15 (02): : 35 - 40
  • [8] Simultaneous detection of diverse analytes with an aptazyme ligase array
    Hesselberth, JR
    Robertson, MP
    Knudsen, SM
    Ellington, AD
    [J]. ANALYTICAL BIOCHEMISTRY, 2003, 312 (02) : 106 - 112
  • [9] Jayasena SD, 1999, CLIN CHEM, V45, P1628
  • [10] Designed signaling aptamers that transduce molecular recognition to changes in fluorescence intensity
    Jhaveri, SD
    Kirby, R
    Conrad, R
    Maglott, EJ
    Bowser, M
    Kennedy, RT
    Glick, G
    Ellington, AD
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (11) : 2469 - 2473