A human MSH2-human MSH3 (hMSH2 . hMSH3) complex of approximately 1:1 stoichiometry (human MutS beta (hMutS beta)) has been demonstrated in several human tumor cell lines and purified to near homogeneity, In vitro, hMutS beta supports the efficient repair of insertion/deletion (I/D) heterologies of 2-8 nucleotides, is weakly active on a single-nucleotide I/D mispair, and is not detectably active on the eight base-base mismatches, Human MutS alpha (hMutS alpha), a heterodimer of hMSH2 and hMSH6, efficiently supports the repair of single-nucleotide IID mismatches, base-base mispairs, and all substrates tested that were repaired by hMutS beta, Thus, the repair specificities of hMutS alpha and hMutS beta are redundant with respect to the repair of I/D heterologies of 2-8 nucleotides. The hMutSa level in repair-proficient HeLa cells (1.5 mu g/mg nuclear extract) is approximately 10 times that of hMutS beta. In HCT-15 colorectal tumor cells, which do not contain hMSH6 and consequently lack hMutS alpha, the hMutS beta level is elevated severalfold relative to that in HeLa cells and is responsible for the repair of I/D mismatches that has been observed in this cell line. LoVo tumor cells, which are genetically deficient in hMSH2, lack both hMutS alpha and hMutS beta, and hMSH3 and hMSH6 levels are less than 4% of those found in repair-proficient cells. Coupled with previous findings (J. T. Drummond, J, Genschel, E. Wolf, and P. Modrich (1997) Proc. Natl. Acad Sci. U.S.A. 94, 10144-10149), these results suggest that hMSH2 partitions between available pools of hMSH3 and hMSH6 and indicate that hMSH2 positively modulates hMSH6 and hMSH3 levels, perhaps by stabilization of the polypeptides upon heterodimer formation.