Performance of MALDI-TOF MS for identification of oral Prevotella species

被引:20
作者
Gursoy, Mervi [1 ]
Harju, Inka [2 ]
Matomaki, Jaakko [3 ]
Bryk, Anne [4 ]
Kononen, Eija [1 ,5 ]
机构
[1] Univ Turku, Inst Dent, Dept Periodontol, Lemminkhisenkatu 2, FI-20520 Turku, Finland
[2] Turku Univ Hosp, Clin Microbiol Lab, Kunnallissairaalantie 20, FI-20700 Turku, Finland
[3] Univ Turku, Dept Biostat, Lemminkaisenkatu 1, FI-20520 Turku, Finland
[4] Natl Inst Hlth & Welf, Bacterial Infect Unit, Mannerheimintie 166, FI-00271 Helsinki, Finland
[5] Welf Div, Lemminketisenkatu 2, FI-20520 Turku, Finland
关键词
Anaerobic bacteria; MALDI-TOF MS; Molecular diagnostic techniques; Mouth; FLIGHT MASS-SPECTROMETRY; DESORPTION IONIZATION-TIME; LASER-DESORPTION/IONIZATION-TIME; RELEVANT ANAEROBIC-BACTERIA; ROUTINE IDENTIFICATION; BACTEROIDES-FRAGILIS; DENTAL IMPLANTS; BLOOD CULTURE; SP NOV; MICROBIOLOGY;
D O I
10.1016/j.anaerobe.2017.04.008
中图分类号
Q93 [微生物学];
学科分类号
071005 [微生物学];
摘要
During the past decade, the clinically relevant genus Prevotella has expanded considerably. Prevotella species can be isolated from nearly all types of oral infections but also from various non-oral infections. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) has been introduced in clinical microbiology laboratories as a convenient method for identifying bacterial isolates from clinical specimens. Here we tested the diagnostic accuracy of a total of 123 oral Prevotella isolates, selected based on their biochemical profile, by Bruker MALDI-TOF MS. Partial 16S rRNA sequencing was used as a reference method. The performance of MALDI-TOF MS to identify the isolates to the genus level was excellent with 100.0% accuracy, while a good identification rate of 88.6% was achieved to the species level with a log score of >2.0. The isolates representing P. aurantiaca and P. jejuni, which are currently missing from the MALDI BioTyper database, were identified correctly to the genus level. Of the 123 isolates, one P. pollens isolate (0.8%) was identified with a score variation of 1.7-1.999. Overall, biochemical testing produced a high proportion (70.7%) of incorrect identifications within different species. MALDI-TOF MS offers a reliable and rapid method for the identification of Prevotella species included in the database. (C) 2017 Elsevier Ltd. All rights reserved.
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收藏
页码:89 / 93
页数:5
相关论文
共 39 条
[1]
Comparison of Direct Colony Method versus Extraction Method for Identification of Gram-Positive Cocci by Use of Bruker Biotyper Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry [J].
Alatoom, Adnan A. ;
Cunningham, Scott A. ;
Ihde, Sherry M. ;
Mandrekar, Jayawant ;
Patel, Robin .
JOURNAL OF CLINICAL MICROBIOLOGY, 2011, 49 (08) :2868-2873
[2]
Pyrosequencing Unveils Cystic Fibrosis Lung Microbiome Differences Associated with a Severe Lung Function Decline [J].
Bacci, Giovanni ;
Paganin, Patrizia ;
Lopez, Loredana ;
Vanni, Chiara ;
Dalmastri, Claudia ;
Cantale, Cristina ;
Daddiego, Loretta ;
Perrotta, Gaetano ;
Dolce, Daniela ;
Morelli, Patrizia ;
Tuccio, Vanessa ;
De Alessandri, Alessandra ;
Fiscarelli, Ersilia Vita ;
Taccetti, Giovanni ;
Lucidi, Vincenzina ;
Bevivino, Annamaria ;
Mengoni, Alessio .
PLOS ONE, 2016, 11 (06)
[3]
Molecular analysis of microbial diversity in advanced caries [J].
Chhour, KL ;
Nadkarni, MA ;
Byun, R ;
Martin, FE ;
Jacques, NA ;
Hunter, N .
JOURNAL OF CLINICAL MICROBIOLOGY, 2005, 43 (02) :843-849
[4]
Advancement in the routine identification of anaerobic bacteria by MALDI-TOF mass spectrometry [J].
Coltella, L. ;
Mancinelli, L. ;
Onori, M. ;
Lucignano, B. ;
Menichella, D. ;
Sorge, R. ;
Raponi, M. ;
Mancini, R. ;
Russo, C. .
EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES, 2013, 32 (09) :1183-1192
[5]
Anaerobic bacteraemia: a 10-year retrospective epidemiological survey [J].
De Keukeleire, Steven ;
Wybo, Ingrid ;
Naessens, Anne ;
Echahidi, Fedoua ;
Van der Beken, Mieke ;
Vandoorslaer, Kristof ;
Vermeulen, Stefan ;
Pierard, Denis .
ANAEROBE, 2016, 39 :54-59
[6]
Use of MALDI-TOF/MS for routine detection of cfiA gene-positive Bacteroides fragilis strains [J].
Fenyvesi, Viktor Sandor ;
Urban, Edit ;
Bartha, Noemi ;
Abrok, Mariann ;
Kostrzewa, Markus ;
Nagy, Elisabeth ;
Minarovits, Janos ;
Soki, Jozsef .
INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS, 2014, 44 (05) :474-475
[7]
Gürsoy M, 2009, ORAL MICROBIOL IMMUN, V24, P299, DOI 10.1111/j.1399-302X.2009.00509.x
[8]
Anaerobic blood culture isolates in a Norwegian university hospital: identification by MALDI-TOF MS vs 16S rRNA sequencing and antimicrobial susceptibility profiles [J].
Handal, Nina ;
Jorgensen, Silje Bakken ;
Tunsjo, Hege Smith ;
Johnsen, Bjorn Odd ;
Leegaard, Truls Michael .
APMIS, 2015, 123 (09) :749-758
[9]
Prevotella jejuni sp nov., isolated from the small intestine of a child with coeliac disease [J].
Hedberg, Maria E. ;
Israelsson, Anne ;
Moore, Edward R. B. ;
Svensson-Stadler, Liselott ;
Wai, Sun Nyunt ;
Pietz, Grzegorz ;
Sandstrom, Olof ;
Hernell, Olle ;
Hammarstrom, Marie-Louise ;
Hammarstrom, Sten .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2013, 63 :4218-4223
[10]
USE OF THE POLYMERASE CHAIN-REACTION AND DNA-SEQUENCING FOR DETECTION OF BARTONELLA-QUINTANA IN THE AORTIC-VALVE OF A PATIENT WITH CULTURE-NEGATIVE INFECTIVE ENDOCARDITIS [J].
JALAVA, J ;
KOTILAINEN, P ;
NIKKARI, S ;
SKURNIK, M ;
VANTTINEN, E ;
LEHTONEN, OP ;
EEROLA, E ;
TOIVANEN, P .
CLINICAL INFECTIOUS DISEASES, 1995, 21 (04) :891-896