FAMOZ: a software for parentage analysis using dominant, codominant and uniparentally inherited markers

被引：200

作者：

Gerber, S

Chabrier, P

Kremer, A

机构：

[1] INRA, UMR BIOGECO, F-33612 Cestas, France

[2] INRA, Unite Biometrie & Intelligence Artificielle, F-31326 Castanet Tolosan, France

来源：

MOLECULAR ECOLOGY NOTES | 2003年 / 3卷 / 03期

关键词：

LOD scores; open code software; paternity; simulation;

D O I：

10.1046/j.1471-8286.2003.00439.x

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

FAMOZ (an acronym for father/mother) is a software useful in reconstructing parentage for dominant, codominant and uniparentally inherited markers. It is written in C and TclTk languages and is available for Unix, Linux and Windows systems at http://www.pierroton.inra.fr/genetics/labo/Software/Famoz/index.html. Parameters and assumptions used in the calculations are few and simple. Exclusion and identity probabilities, log-likelihoods of any genetic relationship, potential father and parent or parent pair, half- and full-sibship are calculated based on real or simulated data. Error rates for genotypic mistyping can be introduced. Simulations can be done to build statistical tests for parentage assignment.

引用

页码：479 / 481

页数：3

共 8 条

[1] Brenner CH, 1997, GENETICS, V145, P535
[2] Comparison of microsatellites and amplified fragment length polymorphism markers for parentage analysis
Gerber, S
Mariette, S
Streiff, R
Bodénès, C
Kremer, A
[J]. MOLECULAR ECOLOGY, 2000, 9 (08) : 1037 - 1048
[3] Comparisons of three probability formulae for parentage exclusion
Jamieson, A
Taylor, SS
[J]. ANIMAL GENETICS, 1997, 28 (06) : 397 - 400
[4] Statistical confidence for likelihood-based paternity inference in natural populations
Marshall, TC
Slate, J
Kruuk, LEB
Pemberton, JM
[J]. MOLECULAR ECOLOGY, 1998, 7 (05) : 639 - 655
[5] THE RELATIONSHIP BETWEEN SINGLE PARENT AND PARENT PAIR GENETIC LIKELIHOODS IN GENEALOGY RECONSTRUCTION
MEAGHER, TR
THOMPSON, E
[J]. THEORETICAL POPULATION BIOLOGY, 1986, 29 (01) : 87 - 106
[6] Press W. H., 1992, NUMERICAL RECIPES C, P274
[7] Estimating the probability of identity among genotypes in natural populations: cautions and guidelines
Waits, LP
Luikart, G
Taberlet, P
[J]. MOLECULAR ECOLOGY, 2001, 10 (01) : 249 - 256
[8] WELCH BB, 1999, PRACTICAL PROGRAMMIN

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