Lead Optimization Using Matched Molecular Pairs: Inclusion of Contextual Information for Enhanced Prediction of hERG Inhibition, Solubility, and Lipophilicity

被引:94
作者
Papadatos, George [1 ]
Alkarouri, Muhammad [1 ]
Gillet, Valerie J. [1 ]
Willett, Peter [1 ]
Kadirkamanathan, Visakan [2 ]
Luscombe, Christopher N. [3 ]
Bravi, Gianpaolo [3 ]
Richmond, Nicola J. [3 ]
Pickett, Stephen D. [3 ]
Hussain, Jameed [3 ]
Pritchard, John M. [3 ]
Cooper, Anthony W. J. [3 ]
Macdonald, Simon J. F. [3 ]
机构
[1] Univ Sheffield, Informat Sch, Sheffield S1 4DP, S Yorkshire, England
[2] Univ Sheffield, Dept Automat Control & Syst Engn, Sheffield S1 3JD, S Yorkshire, England
[3] GlaxoSmithKline Med Res Ctr, Stevenage SG1 2NY, Herts, England
基金
英国工程与自然科学研究理事会;
关键词
CHEMICAL REPLACEMENTS; SIMILARITY; SUBSTITUENTS; CHEMISTRY; BINDING; QSAR;
D O I
10.1021/ci100258p
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
Previous studies of the analysis of molecular matched pairs (MMPs) have often assumed that the effect of a substructural transformation on a molecular property is independent of the context (i.e., the local structural environment in which that transformation occurs). Experiments with large sets of hERG, solubility, and lipophilicity data demonstrate that the inclusion of contextual information can enhance the predictive power of MMP analyses, with significant trends (both positive and negative) being identified that are not apparent when using conventional, context-independent approaches.
引用
收藏
页码:1872 / 1886
页数:15
相关论文
共 30 条
[1]  
*ACC INC, 2010, ACC PIP PIL VERS 7 0
[2]  
[Anonymous], 2007, An introduction to chemoinformatics
[3]   The properties of known drugs .1. Molecular frameworks [J].
Bemis, GW ;
Murcko, MA .
JOURNAL OF MEDICINAL CHEMISTRY, 1996, 39 (15) :2887-2893
[4]   Molecular similarity searching using atom environments, information-based feature selection, and a naive Bayesian classifier [J].
Bender, A ;
Mussa, HY ;
Glen, RC ;
Reiling, S .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2004, 44 (01) :170-178
[5]   Evaluation of the chemiluminescent nitrogen detector for solubility determinations to support drug discovery [J].
Bhattachar, SN ;
Wesley, JA ;
Seadeek, C .
JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS, 2006, 41 (01) :152-157
[6]   Matched molecular pair analysis of activity and properties of glycogen phosphorylase inhibitors [J].
Birch, Alan M. ;
Kenny, Peter W. ;
Simpson, Iain ;
Whittamore, Paul R. O. .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2009, 19 (03) :850-853
[7]   Use of Reduced Graphs To Encode Bioisosterism for Similarity-Based Virtual Screening [J].
Birchall, Kristian ;
Gillet, Valerie J. ;
Willett, Peter ;
Ducrot, Pierre ;
Luttmann, Claude .
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2009, 49 (06) :1330-1346
[8]   COMPARATIVE MOLECULAR-FIELD ANALYSIS (COMFA) .1. EFFECT OF SHAPE ON BINDING OF STEROIDS TO CARRIER PROTEINS [J].
CRAMER, RD ;
PATTERSON, DE ;
BUNCE, JD .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1988, 110 (18) :5959-5967
[9]   MATHEMATICAL CONTRIBUTION TO STRUCTURE-ACTIVITY STUDIES [J].
FREE, SM ;
WILSON, JW .
JOURNAL OF MEDICINAL CHEMISTRY, 1964, 7 (04) :395-&
[10]   ADMET rules of thumb II: A comparison of the effects of common substituents on a range of ADMET parameters [J].
Gleeson, Paul ;
Bravi, Gianpaolo ;
Modi, Sandeep ;
Lowe, Daniel .
BIOORGANIC & MEDICINAL CHEMISTRY, 2009, 17 (16) :5906-5919