Statistical analysis of plasma thermograms measured by differential scanning calorimetry

被引:38
作者
Fish, Daniel J. [1 ,6 ]
Brewood, Greg P. [1 ,6 ]
Kim, Jong Sung [2 ]
Garbett, Nichola C. [3 ]
Chaires, Jonathan B. [3 ]
Benight, Albert S. [1 ,4 ,5 ,6 ]
机构
[1] Portland Biosci Inc, Portland, OR USA
[2] Portland State Univ, Fariborz Maseeh Dept Math & Stat, Portland, OR 97207 USA
[3] Univ Louisville, James Graham Brown Canc Ctr, Louisville, KY 40292 USA
[4] Portland State Univ, Dept Chem, Portland, OR 97207 USA
[5] Portland State Univ, Dept Phys, Portland, OR 97207 USA
[6] Louisville Biosci Inc, Louisville, KY USA
基金
美国国家科学基金会;
关键词
Plasma thermograms; Diagnostics; Calorimetry; Biostatistics; Chemometrics; LIGAND-BINDING; THERMODYNAMICS; KINETICS; PROTEOME; TOOL;
D O I
10.1016/j.bpc.2010.09.007
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Melting curves of human plasma measured by differential scanning calorimetry (DSC), known as thermograms, have the potential to markedly impact diagnosis of human diseases. A general statistical methodology is developed to analyze and classify DSC thermograms to analyze and classify thermograms. Analysis of an acquired thermogram involves comparison with a database of empirical reference thermograms from clinically characterized diseases. Two parameters, a distance metric, P. and correlation coefficient, r, are combined to produce a 'similarity metric,' p, which can be used to classify unknown thermograms into pre-characterized categories. Simulated thermograms known to lie within or fall outside of the 90% quantile range around a median reference are also analyzed. Results verify the utility of the methods and establish the apparent dynamic range of the metric p. Methods are then applied to data obtained from a collection of plasma samples from patients clinically diagnosed with SLE (lupus). High correspondence is found between curve shapes and values of the metric p. In a final application, an elementary classification rule is implemented to successfully analyze and classify unlabeled thermograms. These methods constitute a set of powerful yet easy to implement tools for quantitative classification, analysis and interpretation of DSC plasma melting curves. (C) 2010 Elsevier B.V. All rights reserved.
引用
收藏
页码:184 / 190
页数:7
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