Coding potential of laboratory and clinical strains of human cytomegalovirus

被引:378
作者
Murphy, E
Yu, D
Grimwood, J
Schmutz, J
Dickson, M
Jarvis, MA
Hahn, G
Nelson, JA
Myers, RM
Shenk, TE [1 ]
机构
[1] Princeton Univ, Dept Mol Biol, Princeton, NJ USA
[2] Stanford Univ, Sch Med, Dept Genet, Stanford Human Genome Ctr, Stanford, CA 94305 USA
[3] Oregon Hlth & Sci Univ, Vaccine & Gene Therapy Inst, Portland, OR 97239 USA
[4] Oregon Hlth & Sci Univ, Dept Mol Microbiol, Portland, OR 97239 USA
[5] Oregon Hlth & Sci Univ, Dept Immunol, Portland, OR 97239 USA
[6] Univ Munich, Max Von Pettenkofer Inst, Abt Virol, D-80336 Munich, Germany
关键词
D O I
10.1073/pnas.2136652100
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Six strains of human cytomegalovirus have been sequenced, including two laboratory strains (AD169 and Towne) that have been extensively passaged in fibroblasts and four clinical isolates that have been passaged to a limited extent in the laboratory (Toledo, FIX, PH, and TR). All of the sequenced viral genomes have been cloned as infectious bacterial artificial chromosomes. A total of 252 ORFs with the potential to encode proteins have been identified that are conserved in all four clinical isolates of the virus. Multiple sequence alignments revealed substantial variation in the amino acid sequences encoded by many of the conserved ORFs.
引用
收藏
页码:14976 / 14981
页数:6
相关论文
共 53 条
[1]   THE STRUCTURE OF THE MAJOR IMMEDIATE EARLY GENE OF HUMAN CYTOMEGALO-VIRUS STRAIN AD169 [J].
AKRIGG, A ;
WILKINSON, GWG ;
ORAM, JD .
VIRUS RESEARCH, 1985, 2 (02) :107-121
[2]   Two novel spliced genes in human cytomegalovirus [J].
Akter, P ;
Cunningham, C ;
McSharry, BP ;
Dolan, A ;
Addison, C ;
Dargan, DJ ;
Hassan-Walker, AF ;
Emery, VC ;
Griffiths, PD ;
Wilkinson, GWG ;
Davison, AJ .
JOURNAL OF GENERAL VIROLOGY, 2003, 84 :1117-1122
[3]  
ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
[4]  
[Anonymous], 2001, FIELDS VIROLOGY
[5]   Genomes of the endothelial cell-tropic variant and the parental Toledo strain of human cytomegalovirus are highly divergent [J].
Baldanti, F ;
Revello, MG ;
Percivalle, E ;
Labò, N ;
Gerna, G .
JOURNAL OF MEDICAL VIROLOGY, 2003, 69 (01) :76-81
[6]   Mutant human cytomegalovirus lacking the immediate-early TRS1 coding region exhibits a late defect [J].
Blankenship, CA ;
Shenk, T .
JOURNAL OF VIROLOGY, 2002, 76 (23) :12290-12299
[7]   Cloning of the human cytomegalovirus (HCMV) genome as an infectious bacterial artificial chromosome in Escherichia coli:: a new approach for construction of HCMV mutants [J].
Borst, EM ;
Hahn, G ;
Koszinowski, UH ;
Messerle, M .
JOURNAL OF VIROLOGY, 1999, 73 (10) :8320-8329
[8]   DRAMATIC INTERSTRAIN DIFFERENCES IN THE REPLICATION OF HUMAN CYTOMEGALOVIRUS IN SCID-HU MICE [J].
BROWN, JM ;
KANESHIMA, H ;
MOCARSKI, ES .
JOURNAL OF INFECTIOUS DISEASES, 1995, 171 (06) :1599-1603
[9]   The role of the genetic code in generating new coding sequences inside existing genes [J].
Cebrat, S ;
Mackiewicz, P ;
Dudek, MR .
BIOSYSTEMS, 1998, 45 (02) :165-176
[10]   Human cytomegalovirus clinical isolates carry at least 19 genes not found in laboratory strains [J].
Cha, TA ;
Tom, E ;
Kemble, GW ;
Duke, GM ;
Mocarski, ES ;
Spaete, RR .
JOURNAL OF VIROLOGY, 1996, 70 (01) :78-83