共 79 条
Combining electron microscopy and comparative protein structure modeling
被引:51
作者:

Topf, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Dept Biopharmaceut Sci, San Francisco, CA 94143 USA

Sali, A
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif San Francisco, Dept Biopharmaceut Sci, San Francisco, CA 94143 USA Univ Calif San Francisco, Dept Biopharmaceut Sci, San Francisco, CA 94143 USA
机构:
[1] Univ Calif San Francisco, Dept Biopharmaceut Sci, San Francisco, CA 94143 USA
[2] Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94143 USA
[3] Univ Calif San Francisco, Calif Inst Quantitat Biomed Res, San Francisco, CA 94143 USA
关键词:
D O I:
10.1016/j.sbi.2005.08.001
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
Recently, advances have been made in methods and applications that integrate electron microscopy density maps and comparative modeling to produce atomic structures of macromolecular assemblies. Electron microscopy can benefit from comparative modeling through the fitting of comparative models into electron microscopy density maps. Also, comparative modeling can benefit from electron microscopy through the use of intermediate-resolution density maps in fold recognition, template selection and sequence-structure alignment.
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页码:578 / 585
页数:8
相关论文
共 79 条
[1]
Structural characterization of assemblies from overall shape and subcomplex compositions
[J].
Alber, F
;
Kim, MF
;
Sali, A
.
STRUCTURE,
2005, 13 (03)
:435-445

Alber, F
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Dept Biopharmaceut Sci, San Francisco, CA 94143 USA

Kim, MF
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Dept Biopharmaceut Sci, San Francisco, CA 94143 USA

Sali, A
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Dept Biopharmaceut Sci, San Francisco, CA 94143 USA
[2]
The cell as a collection of protein machines: Preparing the next generation of molecular biologists
[J].
Alberts, B
.
CELL,
1998, 92 (03)
:291-294

Alberts, B
论文数: 0 引用数: 0
h-index: 0
机构: Natl Acad Sci, Washington, DC 20418 USA
[3]
A complex prediction:: three-dimensional model of the yeast exosome
[J].
Aloy, P
;
Ciccarelli, FD
;
Leutwein, C
;
Gavin, AC
;
Superti-Furga, G
;
Bork, P
;
Böttcher, B
;
Russell, RB
.
EMBO REPORTS,
2002, 3 (07)
:628-635

Aloy, P
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Ciccarelli, FD
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Leutwein, C
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Gavin, AC
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Superti-Furga, G
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Bork, P
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Böttcher, B
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany

Russell, RB
论文数: 0 引用数: 0
h-index: 0
机构: European Mol Biol Lab, D-69117 Heidelberg, Germany
[4]
The universal protein resource (UniProt)
[J].
Bairoch, A
;
Apweiler, R
;
Wu, CH
;
Barker, WC
;
Boeckmann, B
;
Ferro, S
;
Gasteiger, E
;
Huang, HZ
;
Lopez, R
;
Magrane, M
;
Martin, MJ
;
Natale, DA
;
O'Donovan, C
;
Redaschi, N
;
Yeh, LSL
.
NUCLEIC ACIDS RESEARCH,
2005, 33
:D154-D159

Bairoch, A
论文数: 0 引用数: 0
h-index: 0
机构: European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England

论文数: 引用数:
h-index:
机构:

Wu, CH
论文数: 0 引用数: 0
h-index: 0
机构: European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England

Barker, WC
论文数: 0 引用数: 0
h-index: 0
机构: European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England

Boeckmann, B
论文数: 0 引用数: 0
h-index: 0
机构: European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England

Ferro, S
论文数: 0 引用数: 0
h-index: 0
机构: European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England

Gasteiger, E
论文数: 0 引用数: 0
h-index: 0
机构: European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England

Huang, HZ
论文数: 0 引用数: 0
h-index: 0
机构: European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England

Lopez, R
论文数: 0 引用数: 0
h-index: 0
机构: European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England

论文数: 引用数:
h-index:
机构:

Martin, MJ
论文数: 0 引用数: 0
h-index: 0
机构: European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England

Natale, DA
论文数: 0 引用数: 0
h-index: 0
机构: European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England

论文数: 引用数:
h-index:
机构:

论文数: 引用数:
h-index:
机构:

Yeh, LSL
论文数: 0 引用数: 0
h-index: 0
机构: European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
[5]
Protein structure prediction and structural genomics
[J].
Baker, D
;
Sali, A
.
SCIENCE,
2001, 294 (5540)
:93-96

Baker, D
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Washington, Howard Hughes Med Inst, Seattle, WA 98195 USA Univ Washington, Howard Hughes Med Inst, Seattle, WA 98195 USA

Sali, A
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Howard Hughes Med Inst, Seattle, WA 98195 USA
[6]
Architecture of the herpes simplex virus major capsid protein derived from structural bioinformatics
[J].
Baker, ML
;
Jiang, W
;
Bowman, BR
;
Zhou, ZH
;
Quiocho, FA
;
Rixon, FJ
;
Chiu, W
.
JOURNAL OF MOLECULAR BIOLOGY,
2003, 331 (02)
:447-456

Baker, ML
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Natl Ctr Macromol Imaging, Houston, TX 77030 USA

Jiang, W
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Natl Ctr Macromol Imaging, Houston, TX 77030 USA

Bowman, BR
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Natl Ctr Macromol Imaging, Houston, TX 77030 USA

Zhou, ZH
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Natl Ctr Macromol Imaging, Houston, TX 77030 USA

Quiocho, FA
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Natl Ctr Macromol Imaging, Houston, TX 77030 USA

Rixon, FJ
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Natl Ctr Macromol Imaging, Houston, TX 77030 USA

Chiu, W
论文数: 0 引用数: 0
h-index: 0
机构:
Baylor Coll Med, Natl Ctr Macromol Imaging, Houston, TX 77030 USA Baylor Coll Med, Natl Ctr Macromol Imaging, Houston, TX 77030 USA
[7]
The skeletal muscle Ca2+ release channel has an oxidoreductase-like domain
[J].
Baker, ML
;
Serysheva, II
;
Sencer, S
;
Wu, YL
;
Ludtke, SJ
;
Jiang, W
;
Hamilton, SL
;
Chiu, W
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2002, 99 (19)
:12155-12160

Baker, ML
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA

Serysheva, II
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA

Sencer, S
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA

Wu, YL
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA

Ludtke, SJ
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA

Jiang, W
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA

Hamilton, SL
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA

Chiu, W
论文数: 0 引用数: 0
h-index: 0
机构: Baylor Coll Med, Program Struct & Computat Biol & Mol Biophys, Houston, TX 77030 USA
[8]
Exploiting the past and the future in protein secondary structure prediction
[J].
Baldi, P
;
Brunak, S
;
Frasconi, P
;
Soda, G
;
Pollastri, G
.
BIOINFORMATICS,
1999, 15 (11)
:937-946

Baldi, P
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Irvine, Coll Med, Dept Informat & Comp Sci, Irvine, CA 92697 USA Univ Calif Irvine, Coll Med, Dept Informat & Comp Sci, Irvine, CA 92697 USA

Brunak, S
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Irvine, Coll Med, Dept Informat & Comp Sci, Irvine, CA 92697 USA

Frasconi, P
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Irvine, Coll Med, Dept Informat & Comp Sci, Irvine, CA 92697 USA

Soda, G
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Irvine, Coll Med, Dept Informat & Comp Sci, Irvine, CA 92697 USA

Pollastri, G
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Irvine, Coll Med, Dept Informat & Comp Sci, Irvine, CA 92697 USA
[9]
Architecture of the protein-conducting channel associated with the translating 80S ribosome
[J].
Beckmann, R
;
Spahn, CMT
;
Eswar, N
;
Helmers, J
;
Penczek, PA
;
Sali, A
;
Frank, J
;
Blobel, G
.
CELL,
2001, 107 (03)
:361-372

Beckmann, R
论文数: 0 引用数: 0
h-index: 0
机构: Rockefeller Univ, Howard Hughes Med Inst, Cell Biol Lab, New York, NY 10021 USA

Spahn, CMT
论文数: 0 引用数: 0
h-index: 0
机构: Rockefeller Univ, Howard Hughes Med Inst, Cell Biol Lab, New York, NY 10021 USA

Eswar, N
论文数: 0 引用数: 0
h-index: 0
机构: Rockefeller Univ, Howard Hughes Med Inst, Cell Biol Lab, New York, NY 10021 USA

Helmers, J
论文数: 0 引用数: 0
h-index: 0
机构: Rockefeller Univ, Howard Hughes Med Inst, Cell Biol Lab, New York, NY 10021 USA

Penczek, PA
论文数: 0 引用数: 0
h-index: 0
机构: Rockefeller Univ, Howard Hughes Med Inst, Cell Biol Lab, New York, NY 10021 USA

Sali, A
论文数: 0 引用数: 0
h-index: 0
机构: Rockefeller Univ, Howard Hughes Med Inst, Cell Biol Lab, New York, NY 10021 USA

Frank, J
论文数: 0 引用数: 0
h-index: 0
机构: Rockefeller Univ, Howard Hughes Med Inst, Cell Biol Lab, New York, NY 10021 USA

Blobel, G
论文数: 0 引用数: 0
h-index: 0
机构: Rockefeller Univ, Howard Hughes Med Inst, Cell Biol Lab, New York, NY 10021 USA
[10]
KNOWLEDGE-BASED PREDICTION OF PROTEIN STRUCTURES AND THE DESIGN OF NOVEL MOLECULES
[J].
BLUNDELL, TL
;
SIBANDA, BL
;
STERNBERG, MJE
;
THORNTON, JM
.
NATURE,
1987, 326 (6111)
:347-352

BLUNDELL, TL
论文数: 0 引用数: 0
h-index: 0
机构: Laboratory of Molecular Biology, Department of Crystallography, Birbeck College, University of London, London WC1E 7HX, United Kingdom

SIBANDA, BL
论文数: 0 引用数: 0
h-index: 0
机构: Laboratory of Molecular Biology, Department of Crystallography, Birbeck College, University of London, London WC1E 7HX, United Kingdom

STERNBERG, MJE
论文数: 0 引用数: 0
h-index: 0
机构: Laboratory of Molecular Biology, Department of Crystallography, Birbeck College, University of London, London WC1E 7HX, United Kingdom

THORNTON, JM
论文数: 0 引用数: 0
h-index: 0
机构: Laboratory of Molecular Biology, Department of Crystallography, Birbeck College, University of London, London WC1E 7HX, United Kingdom