Localization properties of electronic states in a polaron model of poly(dG)-poly(dC) and poly(dA)-poly(dT) DNA polymers

被引:25
作者
Yamada, H
Starikov, EB
Hennig, D
Archilla, JFR
机构
[1] Karolinska Inst, Novum, Ctr Struct Biochem, S-14157 Huddinge, Sweden
[2] Free Univ Berlin, Fachbereich Phys, Inst Theoret Phys, D-14195 Berlin, Germany
[3] Univ Seville, ETSI Informat, Dept Fis Aplicada 1, GFNL, E-41012 Seville, Spain
关键词
D O I
10.1140/epje/i2004-10135-8
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We numerically investigate localization properties of electronic states in a static model of poly(dG)-poly(dC) and poly(dA)-poly(dT) DNA polymers with realistic parameters obtained by quantum-chemical calculation. The randomness in the on-site energies caused by the electron-phonon coupling is completely correlated to the off-diagonal parts. In the single electron model, the effect of the hydrogen-bond stretchings, the twist angles between the base pairs and the finite system size effects on the energy dependence of the localization length and on the Lyapunov exponent are given. The localization length is reduced by the influence of the fluctuations in the hydrogen bond stretchings. It is also shown that the helical twist angle affects the localization length in the poly (dG)-poly(dC) DNA polymer more strongly than in the poly(dA)-poly(dT) one. Furthermore, we show resonance structures in the energy dependence of the localization length when the system size is relatively small.
引用
收藏
页码:149 / 154
页数:6
相关论文
共 34 条
[1]   Charge migration in DNA: Ion-gated transport [J].
Barnett, RN ;
Cleveland, CL ;
Joy, A ;
Landman, U ;
Schuster, GB .
SCIENCE, 2001, 294 (5542) :567-571
[2]   Localizing energy through nonlinearity and discreteness [J].
Campbell, DK ;
Flach, S ;
Kivshar, YS .
PHYSICS TODAY, 2004, 57 (01) :43-49
[3]   Metal-insulator transition in chains with correlated disorder (Retraction of vol 418, pg 955, 2002) [J].
Carpena, P ;
Bernaola-Galván, P ;
Ivanov, PC ;
Stanley, HE .
NATURE, 2003, 421 (6924) :764-764
[4]   RETRACTED: Metal-insulator transition in chains with correlated disorder (Retracted Article. See vol 421, pg 764, 2003) [J].
Carpena, P ;
Bernaola-Galván, P ;
Ivanov, PC ;
Stanley, HE .
NATURE, 2002, 418 (6901) :955-959
[5]  
CHANG C, CONDMAT0303250
[6]   Polarons in DNA [J].
Conwell, EM ;
Rakhmanova, SV .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (09) :4556-4560
[7]  
Crisanti A., 1993, SPRINGER SERIES SOLI, DOI DOI 10.1007/978-3-642-84942-8
[8]   SUPERDIFFUSION IN STRUCTURALLY DISORDERED-SYSTEMS IN ANY SPATIAL DIMENSION [J].
DUNLAP, DH ;
PHILLIPS, P .
JOURNAL OF CHEMICAL PHYSICS, 1990, 92 (10) :6093-6097
[9]   ABSENCE OF LOCALIZATION IN CERTAIN STATICALLY DISORDERED LATTICES IN ANY SPATIAL DIMENSION [J].
DUNLAP, DH ;
KUNDU, K ;
PHILLIPS, P .
PHYSICAL REVIEW B, 1989, 40 (16) :10999-11006
[10]  
ENDRES RG, CONDMAT0201404